Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 0.0e+00 1260.4 640 100.0
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.3e-298 1029.2 643 84.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.8e-295 1018.8 640 82.0
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 3.7e-293 1011.1 644 83.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.2e-280 969.5 592 82.9
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.7e-280 968.4 593 83.1
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 6.7e-279 963.8 592 83.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 7.8e-243 844.0 653 68.9
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.5e-241 839.0 641 68.0
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 4.7e-240 834.7 660 67.1
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.2e-238 830.1 677 66.3
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.7e-237 825.1 643 66.4
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 6.4e-237 824.3 655 66.7
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 8.3e-237 823.9 655 66.7
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.1e-236 823.5 667 66.0
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 3.2e-236 822.0 610 70.0
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 7.1e-236 820.8 655 66.0
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.2e-235 820.1 652 66.1
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 2.1e-235 819.3 655 66.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.3e-234 816.6 655 66.0
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.2e-232 810.1 655 66.0
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.8e-232 808.9 642 66.7
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.1e-231 807.0 661 63.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 8.9e-231 803.9 651 65.4
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.6e-230 802.4 652 65.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.6e-230 802.4 652 65.2
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.6e-230 802.4 651 65.6
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 3.4e-230 802.0 649 64.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.4e-228 795.8 662 63.1
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 4.1e-228 795.0 615 67.5
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 5.4e-228 794.7 662 63.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 3.5e-227 792.0 649 64.7
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 6.0e-227 791.2 717 60.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.3e-226 790.0 663 62.6
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 3.0e-226 788.9 661 64.3
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 1.1e-225 786.9 667 64.0
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 3.3e-225 785.4 658 63.1
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.4e-223 779.2 717 60.0
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.8e-223 777.7 695 60.4
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 6.8e-223 777.7 639 64.6
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 8.9e-223 777.3 658 63.2
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.0e-222 776.2 662 62.5
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 3.4e-222 775.4 660 63.3
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.4e-222 775.0 639 64.6
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 8.4e-221 770.8 643 63.9
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.1e-220 770.4 650 62.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.4e-220 770.0 594 68.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.4e-220 770.0 639 64.2
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.3e-218 763.5 658 62.0
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.6e-216 755.4 663 61.2
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 8.1e-216 754.2 665 60.3
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 5.3e-215 751.5 574 66.2
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 7.6e-214 747.7 609 65.2
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.3e-213 746.9 615 63.1
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 7.1e-212 741.1 636 61.5
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.1e-209 733.8 655 59.7
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.1e-208 729.6 595 63.9
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 5.3e-207 724.9 597 63.0
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.2e-206 723.8 645 59.7
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 4.5e-206 721.8 662 59.4
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 5.8e-206 721.5 647 60.6
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 9.9e-206 720.7 640 61.6
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.2e-205 719.5 597 62.8
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 4.2e-204 715.3 597 62.8
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 5.4e-204 714.9 589 62.5
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.3e-202 710.3 617 61.9
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 6.7e-202 708.0 608 60.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.1e-201 707.2 667 57.9
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 7.4e-201 704.5 648 58.8
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.5e-196 689.5 641 58.7
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 3.5e-195 685.6 619 58.8
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 1.0e-194 684.1 519 65.7
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 8.7e-194 681.0 627 59.8
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.9e-193 679.9 655 57.7
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 2.5e-193 679.5 662 56.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 5.7e-193 678.3 633 58.1
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.7e-192 675.6 652 57.5
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 3.7e-192 675.6 664 55.6
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 5.3e-191 671.8 584 61.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.0e-189 667.5 636 56.6
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.6e-187 660.2 677 54.8
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 7.9e-187 657.9 492 67.3
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 3.9e-186 655.6 646 54.8
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 3.9e-186 655.6 599 57.6
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.3e-184 650.6 686 54.1
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.3e-184 650.6 656 54.9
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 3.7e-184 649.0 643 55.4
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 8.2e-184 647.9 600 56.3
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 1.8e-183 646.7 666 53.8
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.4e-183 646.4 583 59.2
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.1e-183 646.0 669 54.4
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 5.3e-183 645.2 666 53.5
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-182 644.0 642 55.8
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 2.6e-182 642.9 643 55.7
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.4e-182 642.5 639 53.8
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.4e-182 642.5 636 54.9
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.5e-182 642.1 642 55.6
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 6.5e-181 638.3 650 53.7
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.4e-180 637.1 650 54.5
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.4e-180 637.1 650 54.6
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.2e-180 635.6 555 59.6
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.6e-179 633.6 444 73.2
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 7.9e-179 631.3 645 53.6
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-178 630.9 641 56.0
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 3.9e-178 629.0 645 53.3
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 4.3e-177 625.5 610 56.2
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 5.7e-177 625.2 543 59.5
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.8e-175 620.2 615 55.4
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 4.1e-175 619.0 551 59.2
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.0e-174 616.7 647 53.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.1e-172 610.9 648 52.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.3e-165 587.4 632 49.8
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 3.8e-165 585.9 562 56.2
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.2e-164 582.8 663 50.4
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 7.0e-151 538.5 619 47.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.7e-150 536.6 638 47.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 5.9e-150 535.4 656 47.6
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.8e-146 523.9 577 51.5
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.0e-141 505.8 661 46.6
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 3.9e-125 453.0 632 42.1
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.6e-123 447.6 615 47.3
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 2.4e-119 433.7 655 39.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 7.3e-100 369.0 265 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.1e-95 355.1 478 41.0
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.2e-94 351.7 535 39.4
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 2.7e-94 350.5 329 57.4
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.1e-92 345.1 560 38.4
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-92 344.0 240 68.8
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.1e-91 340.9 602 35.0
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 9.9e-89 332.0 411 44.8
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-84 318.5 217 70.0
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.1e-74 285.4 402 44.5
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.2e-51 208.0 254 47.2
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 6.3e-51 206.5 125 77.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 4.7e-22 110.5 536 22.9
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-08 66.2 64 54.7
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 4.3e-07 60.8 139 33.1
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 2.1e-06 58.5 101 32.7


User provided reference genes

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