Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 6.4e-140 500.7 254 100.0
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 1.5e-88 330.1 214 81.8
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 4.2e-83 312.0 227 72.7
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 5.5e-83 311.6 227 72.2
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 2.1e-82 309.7 175 90.9
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 4.7e-82 308.5 214 78.0
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 5.3e-78 295.0 215 76.3
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.6e-74 283.5 175 84.6
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.7e-74 282.7 211 70.1
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 3.6e-74 282.3 230 68.7
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 8.0e-74 281.2 212 71.2
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 4.0e-73 278.9 234 66.7
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 5.2e-73 278.5 231 67.5
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 5.2e-73 278.5 231 67.5
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 6.8e-73 278.1 177 78.5
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 6.8e-73 278.1 220 67.7
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.2e-72 277.3 219 69.9
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.5e-72 276.9 229 65.5
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.5e-72 276.9 174 79.9
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 5.7e-72 275.0 210 70.0
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-71 273.9 171 81.3
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.2e-71 273.1 231 65.8
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 2.2e-71 273.1 169 82.2
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.8e-71 272.7 177 80.8
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 6.3e-71 271.6 177 80.2
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 8.3e-71 271.2 214 68.7
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.1e-70 270.8 231 65.4
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.1e-70 270.8 231 64.9
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.4e-70 270.4 182 76.9
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 1.8e-70 270.0 182 74.7
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.8e-70 270.0 182 75.3
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.4e-70 269.6 175 78.3
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.4e-70 269.6 176 78.4
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 5.4e-70 268.5 232 65.1
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 7.0e-70 268.1 177 79.1
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 9.1e-70 267.7 181 77.3
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 1.2e-69 267.3 182 76.9
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 2.0e-69 266.5 233 65.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.7e-69 266.2 177 76.8
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 4.5e-69 265.4 175 77.7
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.7e-68 263.5 174 76.4
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.7e-68 263.5 175 75.4
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 2.2e-68 263.1 168 78.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 2.9e-68 262.7 164 80.5
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 2.9e-68 262.7 215 67.9
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 3.8e-68 262.3 164 81.1
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 5.0e-68 261.9 166 80.1
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 8.5e-68 261.2 177 76.8
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.1e-67 260.8 181 76.8
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.1e-67 260.8 188 74.5
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 1.5e-67 260.4 178 77.0
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.5e-67 259.6 179 74.3
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 3.2e-67 259.2 170 76.5
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 4.2e-67 258.8 207 67.6
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 5.5e-67 258.5 211 66.4
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 5.5e-67 258.5 176 75.6
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 7.2e-67 258.1 182 73.1
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 9.4e-67 257.7 175 75.4
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.6e-66 256.9 178 75.3
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.7e-66 256.1 175 74.3
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.7e-66 256.1 175 74.3
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.7e-66 256.1 164 78.0
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.1e-66 255.0 214 65.9
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 6.1e-66 255.0 176 74.4
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 6.1e-66 255.0 172 76.7
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 6.1e-66 255.0 170 78.8
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 1.0e-65 254.2 223 63.7
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.8e-65 253.4 227 62.1
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.3e-65 253.1 171 77.2
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 4.0e-65 252.3 177 76.3
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 4.0e-65 252.3 185 74.1
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 4.0e-65 252.3 182 73.1
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.2e-65 251.9 179 73.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 6.8e-65 251.5 164 79.9
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 8.8e-65 251.1 180 72.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 2.0e-64 250.0 214 64.0
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.6e-64 249.6 225 62.7
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.6e-64 249.6 140 90.0
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.6e-64 249.6 140 90.0
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 4.4e-64 248.8 171 74.9
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 5.7e-64 248.4 173 73.4
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 7.5e-64 248.1 168 76.2
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.3e-63 247.3 194 71.1
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-63 246.9 138 89.1
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.2e-63 246.5 171 74.9
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 2.8e-63 246.1 174 74.7
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.7e-63 245.7 140 88.6
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 3.7e-63 245.7 151 83.4
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.4e-62 243.8 142 87.3
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.8e-62 243.4 150 82.0
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.8e-62 243.4 216 65.3
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 5.4e-62 241.9 175 71.4
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 7.0e-62 241.5 167 71.3
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.6e-61 240.4 152 79.6
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 3.5e-61 239.2 164 75.0
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 4.5e-61 238.8 183 69.4
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 4.5e-61 238.8 150 81.3
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 5.9e-61 238.4 140 83.6
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.0e-60 237.7 191 67.0
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 2.9e-60 236.1 170 74.7
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 5.0e-60 235.3 214 62.6
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 8.6e-60 234.6 187 65.2
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.9e-59 233.4 167 73.7
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 2.5e-59 233.0 160 76.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.6e-59 231.9 183 67.2
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.1e-58 229.9 167 72.5
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.8e-58 229.6 157 72.6
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 3.6e-58 229.2 229 59.4
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.0e-56 223.4 145 79.3
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 5.7e-56 221.9 169 68.0
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 7.5e-56 221.5 136 80.1
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.1e-54 217.6 142 73.2
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 3.2e-54 216.1 168 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 7.8e-53 211.5 170 64.7
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 6.6e-52 208.4 150 72.7
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 6.6e-52 208.4 175 64.6
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 4.7e-50 202.2 136 72.8
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 8.0e-50 201.4 137 74.5
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.9e-46 190.3 176 61.9
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.6e-45 187.2 136 66.2
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.0e-40 170.2 139 62.6
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 8.6e-36 154.8 121 66.9
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.1e-35 154.5 121 66.1
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.3e-35 152.5 121 64.5
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 2.3e-33 146.7 118 63.6
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 4.0e-33 146.0 121 62.0
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 2.0e-32 143.7 82 80.5
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 9.9e-32 141.4 112 66.1
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 9.9e-32 141.4 121 61.2
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 2.2e-31 140.2 161 54.0
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 3.8e-31 139.4 136 55.9
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 9.2e-30 134.8 157 58.6
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 3.5e-29 132.9 103 64.1
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 6.6e-28 128.6 140 48.6
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 4.3e-27 125.9 96 69.8
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 9.6e-27 124.8 102 68.6
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.2e-26 124.4 149 58.4
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 1.6e-26 124.0 103 64.1
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 6.2e-26 122.1 119 57.1
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 1.1e-25 121.3 91 74.7
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 3.1e-25 119.8 118 55.9
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 5.2e-25 119.0 98 67.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.2e-24 117.9 93 68.8
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.4e-24 115.9 112 58.9
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 5.8e-24 115.5 86 66.3
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 9.9e-24 114.8 82 67.1
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 8.4e-23 111.7 88 64.8
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.7e-21 106.7 58 91.4
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 4.6e-21 105.9 70 78.6
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.0e-20 104.8 100 64.0
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-20 104.0 68 80.9
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.1e-20 102.4 149 48.3
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.9e-19 100.5 70 71.4
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 7.3e-19 98.6 69 68.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-16 91.3 56 73.2
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 8.4e-15 85.1 58 79.3
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-14 84.3 84 54.8
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 6.0e-13 79.0 63 65.1
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 6.7e-12 75.5 86 55.8
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.5e-11 74.3 118 42.4
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 5.6e-11 72.4 45 77.8
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 4.8e-10 69.3 107 44.9
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 6.2e-10 68.9 44 77.3
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.0e-09 65.1 58 60.3
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 1.2e-08 64.7 59 59.3
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 4.5e-08 62.8 37 81.1
Eucgr.L03680 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.1e-06 58.2 99 41.4
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 1.4e-06 57.8 30 86.7


User provided reference genes

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