Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.9e-74 282.3 135 100.0
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.2e-30 136.0 141 53.9
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.1e-27 124.8 149 48.3
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.3e-25 120.2 125 51.2
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 2.8e-25 119.0 147 49.7
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.8e-24 116.3 140 45.7
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 2.4e-24 115.9 141 44.0
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 2.4e-24 115.9 145 48.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 4.0e-24 115.2 139 46.0
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.5e-23 113.2 136 47.1
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.4e-23 112.1 136 46.3
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.5e-23 111.7 146 45.9
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 5.8e-23 111.3 150 46.7
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 5.8e-23 111.3 126 46.0
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 7.6e-23 110.9 135 45.2
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 9.9e-23 110.5 132 45.5
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.7e-22 109.8 133 44.4
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.2e-22 109.4 155 47.1
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 3.8e-22 108.6 140 42.1
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 4.9e-22 108.2 148 41.2
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 6.4e-22 107.8 129 45.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-21 107.1 144 42.4
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.4e-21 106.7 129 44.2
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.9e-21 106.3 148 44.6
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.4e-21 105.9 144 43.8
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.4e-21 105.9 130 45.4
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.4e-21 105.9 143 40.6
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.4e-21 105.9 143 40.6
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 4.2e-21 105.1 148 41.2
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.2e-21 105.1 140 41.4
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 5.4e-21 104.8 130 46.2
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 7.1e-21 104.4 128 46.1
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.1e-20 102.8 132 45.5
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 2.7e-20 102.4 136 41.9
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.7e-20 102.4 130 43.1
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.6e-20 101.7 136 41.9
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 4.6e-20 101.7 132 46.2
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 6.0e-20 101.3 157 42.0
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.3e-19 100.1 134 44.8
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 3.0e-19 99.0 135 43.0
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.0e-19 99.0 134 44.8
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.9e-19 98.6 148 40.5
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.7e-19 97.8 145 41.4
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 6.7e-19 97.8 136 41.9
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 8.7e-19 97.4 145 41.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 8.7e-19 97.4 152 41.4
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.5e-18 96.7 131 41.2
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.5e-18 96.7 148 43.2
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.9e-18 96.3 149 42.3
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-18 96.3 143 42.0
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.9e-18 96.3 135 43.7
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.9e-18 96.3 147 42.9
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.5e-18 95.9 127 41.7
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.3e-18 95.5 129 38.8
Prupe.2G019400 Prunus persica HOM05D004108 ORTHO05D004849 3.3e-18 95.5 50 92.0
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 3.3e-18 95.5 140 40.7
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 4.3e-18 95.1 130 41.5
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.3e-18 95.1 132 40.9
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.3e-18 95.1 132 40.9
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.6e-18 94.7 143 41.3
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.4e-18 94.4 125 38.4
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 7.4e-18 94.4 121 41.3
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-17 93.6 129 38.0
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.1e-17 92.8 131 41.2
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 3.6e-17 92.0 134 39.6
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.6e-17 92.0 135 44.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 6.2e-17 91.3 119 43.7
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 8.1e-17 90.9 131 42.7
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.1e-16 90.5 154 38.3
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.1e-16 90.5 125 41.6
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.4e-16 90.1 135 37.8
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.8e-16 89.7 128 43.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.1e-16 89.0 130 42.3
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.0e-16 88.6 131 40.5
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 4.0e-16 88.6 132 40.2
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 4.0e-16 88.6 153 36.6
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 5.3e-16 88.2 134 38.1
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 6.9e-16 87.8 128 39.1
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 6.9e-16 87.8 140 40.7
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 6.9e-16 87.8 140 40.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 6.9e-16 87.8 135 43.0
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 9.0e-16 87.4 133 39.8
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.2e-15 87.0 138 38.4
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.2e-15 87.0 139 38.8
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.0e-15 86.3 143 39.2
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 2.0e-15 86.3 121 42.1
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.0e-15 86.3 129 39.5
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.0e-15 86.3 137 38.0
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 3.4e-15 85.5 105 41.9
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.4e-15 85.5 120 41.7
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.5e-15 85.1 132 39.4
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 4.5e-15 85.1 132 38.6
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 5.8e-15 84.7 132 38.6
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 5.8e-15 84.7 115 40.0
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 7.6e-15 84.3 120 40.8
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 7.6e-15 84.3 141 40.4
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.7e-14 83.2 135 38.5
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 2.9e-14 82.4 120 42.5
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.8e-14 82.0 130 38.5
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 4.9e-14 81.6 128 38.3
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 4.9e-14 81.6 131 39.7
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.9e-14 81.6 136 38.2
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.9e-14 81.6 128 39.8
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.9e-14 81.6 128 39.8
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 6.4e-14 81.3 134 38.1
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 8.4e-14 80.9 142 38.7
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.1e-13 80.5 144 36.8
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.1e-13 80.5 120 40.0
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.4e-13 79.3 123 38.2
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.2e-13 79.0 127 37.0
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.1e-13 77.8 123 38.2
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.6e-12 76.6 119 32.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 2.7e-12 75.9 136 33.8
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 3.5e-12 75.5 122 36.9
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.5e-12 75.5 115 40.0
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 6.0e-12 74.7 120 37.5
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 7.9e-12 74.3 129 38.0
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.0e-11 73.9 120 36.7
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.8e-11 73.2 128 35.9
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 2.3e-11 72.8 129 35.7
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 3.0e-11 72.4 119 36.1
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 3.0e-11 72.4 119 36.1
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 3.0e-11 72.4 120 36.7
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 3.9e-11 72.0 107 40.2
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.1e-11 71.6 150 34.7
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 8.7e-11 70.9 119 35.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.1e-10 70.5 131 36.6
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.9e-10 69.7 119 35.3
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-10 69.7 126 32.5
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 2.5e-10 69.3 127 33.9
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 3.3e-10 68.9 127 36.2
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.3e-10 68.9 121 35.5
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 4.3e-10 68.6 119 33.6
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.3e-10 68.6 129 29.5
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 4.3e-10 68.6 123 35.8
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 4.3e-10 68.6 126 34.1
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 5.6e-10 68.2 119 35.3
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.6e-10 67.4 142 30.3
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.6e-09 66.6 119 34.5
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.1e-09 66.2 116 34.5
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.2e-09 64.7 133 33.8
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-08 63.9 134 32.8
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.8e-08 63.2 145 31.7
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.4e-08 62.8 84 44.0
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.4e-08 62.8 114 36.8
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-08 61.6 126 31.0
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 5.3e-08 61.6 142 32.4
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 6.9e-08 61.2 110 37.3
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 6.9e-08 61.2 134 31.3
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-07 60.5 138 28.3
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-07 60.5 137 29.9
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-07 60.1 142 28.2
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.4e-07 58.9 127 34.6
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.0e-06 57.4 110 36.4
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 1.3e-06 57.0 161 32.3
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.9e-06 55.8 92 37.0
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.8e-06 55.5 98 37.8
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.9e-06 55.1 46 58.7
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 6.5e-06 54.7 124 32.3
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 8.4e-06 54.3 107 37.4
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 8.4e-06 54.3 107 37.4


User provided reference genes

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