Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G370900 Prunus persica HOM05D008022 ORTHO05D010147 1.9e-64 250.0 246 100.0
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 1.0e-17 94.7 241 69.3
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 4.0e-14 82.8 44 77.3
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 5.3e-14 82.4 41 78.0
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 9.0e-14 81.6 57 61.4
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 4.5e-13 79.3 40 75.0
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 7.6e-13 78.6 47 68.1
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.3e-12 77.8 40 75.0
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 1.3e-12 77.8 40 77.5
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 6.4e-12 75.5 43 69.8
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 8.4e-12 75.1 56 57.1
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 1.1e-11 74.7 39 71.8
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 1.1e-11 74.7 36 80.6
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 1.4e-11 74.3 41 75.6
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 1.4e-11 74.3 40 72.5
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 1.4e-11 74.3 40 72.5
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 1.4e-11 74.3 40 72.5
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 1.4e-11 74.3 40 70.0
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 1.9e-11 73.9 40 72.5
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 1.9e-11 73.9 40 70.0
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 3.2e-11 73.2 32 84.4
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 4.2e-11 72.8 40 67.5
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 7.1e-11 72.0 40 67.5
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 7.1e-11 72.0 40 67.5
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 9.3e-11 71.6 33 78.8
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 1.6e-10 70.9 46 65.2
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 1.6e-10 70.9 46 60.9
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 2.1e-10 70.5 35 77.1
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 2.7e-10 70.1 33 78.8
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 3.5e-10 69.7 33 75.8
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 4.6e-10 69.3 33 75.8
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 4.6e-10 69.3 40 70.0
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 6.0e-10 68.9 36 69.4
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 7.9e-10 68.6 32 78.1
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 1.0e-09 68.2 32 75.0
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 1.0e-09 68.2 33 72.7
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 1.3e-09 67.8 33 75.8
unitig_8.g4921 Utricularia gibba HOM05D008022 ORTHO05D010147 2.3e-09 67.0 44 68.2
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 3.0e-09 66.6 60 50.0
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 3.9e-09 66.2 36 66.7
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 5.1e-09 65.9 36 63.9
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 1.1e-08 64.7 28 89.3
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 1.1e-08 64.7 40 57.5
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.5e-08 64.3 37 62.2
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 1.3e-07 61.2 36 58.3
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 1.6e-07 60.8 32 71.9
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 8.1e-07 58.5 33 66.7
Aqoxy5G01499 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 1.4e-06 57.8 39 61.5
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 6.9e-06 55.5 42 47.6


User provided reference genes

Program Settings