Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.7e-294 1013.8 532 100.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 4.0e-208 728.4 542 74.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 8.8e-208 727.2 540 74.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 5.4e-165 585.1 553 63.3
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.1e-164 583.2 552 61.8
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.1e-160 570.9 551 59.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 4.4e-159 565.5 552 59.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.9e-158 562.8 546 60.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.1e-156 556.6 539 60.7
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-155 553.9 560 59.6
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.9e-154 550.1 540 60.7
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 7.3e-154 548.1 540 60.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 9.6e-154 547.7 540 60.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.3e-153 547.4 538 61.3
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.1e-153 546.6 542 60.3
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.3e-152 542.0 540 60.0
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.4e-151 538.9 550 58.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.3e-150 537.3 542 58.5
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.8e-150 535.8 558 59.7
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.1e-149 531.6 547 58.5
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 7.9e-148 528.1 547 56.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 8.7e-147 524.6 535 60.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.1e-146 524.2 550 58.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.9e-146 523.5 544 59.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.3e-146 522.3 558 57.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.1e-145 520.0 565 58.1
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 4.8e-145 518.8 550 58.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 5.3e-144 515.4 556 57.2
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.7e-142 510.4 545 56.9
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.2e-142 510.0 544 57.2
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-141 507.7 551 57.2
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 5.5e-141 505.4 550 56.5
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.5e-141 505.4 559 56.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 7.1e-141 505.0 556 57.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.9e-140 501.5 552 56.3
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.3e-139 500.0 549 55.9
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.7e-139 498.4 548 56.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.3e-138 496.1 553 56.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.8e-137 493.0 560 56.8
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.4e-136 490.7 551 55.7
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 5.3e-136 488.8 625 49.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 6.9e-136 488.4 540 55.6
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.9e-134 482.3 551 54.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.2e-133 479.2 556 55.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.5e-132 476.1 549 55.7
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 4.6e-132 475.7 601 52.1
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.7e-131 471.9 548 55.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.3e-130 469.5 537 55.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.6e-129 467.2 549 53.6
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.6e-129 467.2 554 54.7
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 3.7e-129 466.1 560 54.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.8e-129 465.7 545 53.2
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 9.0e-128 461.5 546 54.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.0e-128 461.5 547 53.9
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.6e-127 459.9 540 53.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 5.8e-127 458.8 564 53.4
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.8e-127 458.8 548 54.2
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-123 448.0 512 55.5
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.3e-123 446.8 543 53.4
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.0e-123 446.4 548 51.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.1e-122 444.5 558 53.6
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 7.4e-122 441.8 535 53.3
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 3.7e-121 439.5 582 49.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.8e-121 439.1 542 52.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.1e-120 438.0 561 51.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-120 438.0 563 52.2
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.1e-120 438.0 556 52.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 9.0e-120 434.9 543 51.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.6e-119 433.3 538 52.2
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.1e-117 427.9 559 51.7
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.9e-117 427.2 553 52.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 7.2e-117 425.2 554 52.7
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.1e-116 422.2 553 49.9
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.8e-115 420.6 561 50.4
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.3e-115 420.2 554 49.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.7e-115 418.7 562 50.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.5e-114 416.8 503 53.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.2e-113 413.7 536 51.9
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.8e-113 412.5 543 49.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.1e-112 411.4 546 50.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.4e-112 411.0 536 51.5
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.2e-111 407.9 537 49.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.9e-111 405.6 540 51.5
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.9e-111 405.6 548 49.8
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.9e-110 403.3 536 49.3
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.9e-109 400.6 552 48.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.5e-109 400.2 534 49.8
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 7.2e-109 398.7 536 50.2
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.7e-108 396.7 534 48.3
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 3.6e-108 396.4 540 49.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.7e-108 396.0 552 49.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.6e-106 390.2 547 47.9
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 6.3e-105 385.6 565 46.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.8e-104 384.0 543 47.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.9e-102 376.7 544 47.6
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 5.0e-102 375.9 533 46.5
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.6e-100 369.8 463 53.1
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.4e-99 367.9 561 48.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 3.0e-99 366.7 558 47.7
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 2.8e-97 360.1 513 49.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 3.1e-96 356.7 723 39.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.9e-94 350.1 540 45.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.5e-93 347.8 534 46.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 5.5e-93 345.9 565 45.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 9.4e-93 345.1 546 43.6
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 6.1e-92 342.4 537 45.4
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.3e-91 340.5 537 45.8
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.2e-91 339.3 400 54.2
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 5.7e-90 335.9 544 44.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 5.7e-90 335.9 544 44.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 7.5e-90 335.5 436 49.5
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.8e-81 307.0 587 41.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-78 296.6 398 49.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 6.6e-78 295.8 310 60.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.7e-76 289.7 531 41.8
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.2e-75 286.2 534 40.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 8.9e-75 285.4 306 56.9
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 5.7e-74 282.7 531 40.9
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 5.7e-74 282.7 531 40.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 7.0e-72 275.8 350 50.9
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.6e-60 238.0 251 56.6
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 8.9e-59 232.3 325 49.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.8e-58 229.6 579 36.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.8e-58 228.8 282 50.7
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.0e-54 217.2 598 34.4
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.9e-51 205.7 423 40.9
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.5e-50 204.9 260 50.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.1e-48 196.8 514 34.6
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-43 181.0 217 54.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.0e-38 164.1 167 60.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.1e-38 163.3 180 55.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.3e-37 159.5 719 28.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.3e-35 153.3 552 33.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.3e-35 153.3 298 38.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.6e-34 151.0 224 46.0
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.4e-25 119.4 482 27.4
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.4e-21 106.3 190 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.9e-17 94.4 531 27.3
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.5e-17 93.2 103 52.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.4e-17 92.8 133 51.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.2e-16 90.9 108 50.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.2e-16 90.5 134 51.5
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.3e-16 89.4 240 37.5
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.7e-15 87.8 162 43.8
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-14 85.9 133 41.4
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.9e-13 81.6 193 37.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 3.8e-09 67.4 463 25.9
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.0e-09 67.0 242 32.6
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 1.9e-08 65.1 41 82.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.5e-08 63.5 198 34.8


User provided reference genes

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