Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 2.7e-75 285.4 161 100.0
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 6.0e-67 257.7 161 90.7
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 1.3e-61 240.0 154 89.0
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 1.1e-60 236.9 161 85.1
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 3.2e-60 235.3 161 85.7
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 4.2e-60 235.0 160 84.4
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 4.6e-59 231.5 161 82.0
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 1.0e-58 230.3 161 82.6
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 8.7e-58 227.3 172 79.7
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 1.1e-57 226.9 162 82.7
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 7.3e-57 224.2 161 82.6
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 1.6e-56 223.0 168 80.4
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 2.8e-56 222.2 161 80.7
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 3.6e-56 221.9 161 81.4
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 6.2e-56 221.1 162 81.5
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 8.1e-56 220.7 162 82.7
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 1.4e-55 219.9 161 80.1
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 1.4e-55 219.9 154 83.8
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 4.0e-55 218.4 161 77.0
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 5.3e-55 218.0 161 79.5
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 5.3e-55 218.0 154 82.5
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 1.2e-54 216.9 161 80.1
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 2.0e-54 216.1 165 77.0
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 2.0e-54 216.1 161 78.9
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 2.6e-54 215.7 162 79.6
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 3.4e-54 215.3 161 78.3
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 5.8e-54 214.5 161 78.9
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 4.9e-53 211.5 161 79.5
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 6.4e-53 211.1 200 67.0
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 1.1e-52 210.3 158 79.7
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.4e-52 209.9 161 79.5
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 3.2e-52 208.8 162 79.6
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 9.3e-52 207.2 161 78.3
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 3.5e-51 205.3 154 81.2
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 6.0e-51 204.5 154 79.9
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 1.0e-50 203.8 164 76.8
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 1.8e-50 203.0 161 77.6
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 2.3e-50 202.6 165 78.8
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 2.3e-50 202.6 161 75.2
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 1.5e-49 199.9 161 77.0
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 1.5e-49 199.9 161 74.5
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 2.5e-49 199.1 163 76.7
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 7.4e-49 197.6 161 74.5
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.6e-48 196.4 163 76.1
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 2.8e-48 195.7 163 76.1
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 8.1e-48 194.1 159 77.4
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 1.1e-47 193.7 170 72.4
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 4.0e-47 191.8 159 76.1
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 1.5e-46 189.9 161 75.8
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 2.6e-46 189.1 162 75.3
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 7.6e-46 187.6 155 76.1
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 1.7e-45 186.4 164 75.6
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 2.2e-45 186.0 159 74.8
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 4.9e-45 184.9 156 75.0
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 8.4e-45 184.1 158 74.1
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.1e-44 183.7 154 77.3
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 1.4e-44 183.3 201 62.2
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 1.4e-44 183.3 161 70.8
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 4.2e-44 181.8 159 74.2
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 5.5e-44 181.4 155 74.2
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 1.2e-43 180.3 194 51.5
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.2e-43 180.3 162 71.6
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 2.1e-43 179.5 155 74.2
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 2.1e-43 179.5 160 73.1
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 2.1e-43 179.5 160 71.9
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 1.0e-42 177.2 159 73.0
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 1.0e-42 177.2 162 71.0
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 5.1e-42 174.9 156 73.7
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 1.1e-41 173.7 155 73.5
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 1.5e-41 173.3 159 72.3
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 2.5e-41 172.6 157 71.3
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 2.5e-41 172.6 141 75.9
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 3.3e-41 172.2 159 71.7
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 5.6e-41 171.4 186 53.8
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 2.8e-40 169.1 160 72.5
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 2.8e-40 169.1 174 58.0
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 2.4e-39 166.0 168 67.3
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 5.3e-39 164.9 156 70.5
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 1.2e-38 163.7 156 69.2
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 1.5e-38 163.3 153 71.2
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 1.5e-38 163.3 153 71.2
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.5e-38 163.3 161 67.7
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 3.4e-38 162.2 150 70.7
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 4.5e-38 161.8 150 70.7
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 2.9e-37 159.1 150 70.0
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 2.9e-37 159.1 150 70.0
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 6.5e-37 157.9 153 69.9
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 6.5e-37 157.9 118 79.7
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 4.2e-36 155.2 152 71.1
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 5.5e-36 154.8 124 72.6
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.6e-35 153.3 153 66.0
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 3.5e-35 152.1 155 54.8
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 1.9e-33 146.4 103 71.8
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 2.5e-33 146.0 139 68.3
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 7.4e-33 144.4 120 73.3
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.6e-32 143.3 124 67.7
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 3.7e-32 142.1 115 72.2
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 2.6e-30 136.0 122 59.8
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.9e-28 129.8 112 61.6
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 4.6e-27 125.2 127 63.0
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 1.5e-25 120.2 147 51.7
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.7e-21 106.7 103 59.2
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 2.1e-19 99.8 110 51.8
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 5.1e-18 95.1 170 45.3
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 1.7e-16 90.1 98 51.0
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 4.1e-15 85.5 100 55.0
FAN27G0088 Fragaria x ananassa HOM05D007166 ORTHO05D009039 2.6e-14 82.8 59 69.5
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 5.2e-10 68.6 67 59.7
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 2.0e-09 66.6 60 55.0
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 6.3e-08 61.6 96 37.5


User provided reference genes

Program Settings