Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 7.5e-153 543.9 289 100.0
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 2.1e-139 499.2 288 87.8
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 6.4e-35 152.1 301 39.9
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.4e-34 149.1 300 38.7
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 9.2e-34 148.3 260 41.5
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 4.6e-33 146.0 234 42.3
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.6e-32 141.7 270 35.6
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.5e-31 141.0 271 35.4
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.6e-31 139.0 295 39.0
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 8.9e-29 131.7 286 33.2
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.6e-28 130.2 238 37.4
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.4e-26 123.6 230 36.1
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 7.1e-26 122.1 265 35.1
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.2e-25 121.3 232 34.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.6e-25 119.4 235 34.9
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.6e-25 119.4 263 35.0
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 7.8e-25 118.6 256 33.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.8e-25 118.6 233 34.3
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.3e-24 117.9 289 31.5
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 8.6e-24 115.2 227 34.4
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.1e-23 114.8 259 33.2
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 1.1e-23 114.8 271 32.1
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 2.5e-23 113.6 253 35.2
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 5.6e-23 112.5 251 31.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 7.3e-23 112.1 236 31.8
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.2e-22 111.3 238 37.0
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 1.6e-22 110.9 259 34.7
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 2.8e-22 110.2 271 32.8
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 2.3e-21 107.1 225 35.6
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.1e-21 106.7 243 31.7
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 6.8e-21 105.5 237 30.8
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.5e-20 104.4 239 36.0
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.5e-20 104.4 257 31.1
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 4.4e-20 102.8 370 26.2
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 4.4e-20 102.8 233 33.0
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.8e-20 102.4 298 29.5
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 5.8e-20 102.4 312 31.7
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-19 101.3 257 33.1
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 3.7e-19 99.8 270 31.5
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 6.4e-19 99.0 258 31.4
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 6.4e-19 99.0 94 53.2
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 8.3e-19 98.6 255 31.4
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 8.3e-19 98.6 275 29.1
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.4e-18 97.8 260 31.9
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.9e-18 97.4 234 32.1
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 9.2e-18 95.1 259 31.3
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-17 94.4 224 30.8
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.6e-17 94.4 224 30.8
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.7e-17 93.6 229 31.4
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.7e-17 93.6 260 30.4
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.7e-17 93.6 247 30.8
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 4.6e-17 92.8 264 29.9
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.8e-17 92.0 227 29.5
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 7.8e-17 92.0 234 32.9
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.3e-16 91.3 295 30.2
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.7e-16 90.9 281 29.9
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.3e-16 90.5 238 30.7
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.3e-16 90.5 270 29.6
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.5e-15 87.8 242 29.8
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.5e-15 87.8 251 30.3
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-15 87.4 227 32.2
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.9e-15 87.4 263 28.1
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.5e-15 87.0 227 31.7
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.3e-15 86.7 226 31.0
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 4.3e-15 86.3 239 28.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 4.3e-15 86.3 247 27.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 9.6e-15 85.1 237 31.6
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.6e-14 84.3 247 30.4
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.6e-14 84.3 245 29.8
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.6e-14 84.3 263 27.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.6e-14 84.3 236 31.4
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 2.1e-14 84.0 236 28.4
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 2.8e-14 83.6 301 26.9
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 3.6e-14 83.2 240 29.6
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.6e-14 83.2 241 27.0
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.6e-14 83.2 233 29.6
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 4.7e-14 82.8 302 27.8
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 4.7e-14 82.8 229 29.7
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 6.2e-14 82.4 258 29.8
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 6.2e-14 82.4 239 27.2
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 8.1e-14 82.0 230 30.9
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.1e-13 81.6 244 29.5
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-13 81.6 242 28.9
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-13 81.6 242 29.8
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.1e-13 81.6 235 27.7
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-13 81.3 256 29.7
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 3.1e-13 80.1 291 27.5
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 3.1e-13 80.1 236 28.4
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.0e-13 79.7 212 32.1
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 5.2e-13 79.3 270 27.0
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 5.2e-13 79.3 276 30.1
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 8.9e-13 78.6 291 30.6
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.2e-12 78.2 232 27.6
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.5e-12 77.8 265 26.8
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.5e-12 77.8 300 28.7
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.5e-12 77.8 246 27.6
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 7.6e-12 75.5 133 34.6
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 9.9e-12 75.1 251 27.9
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.7e-11 74.3 227 24.7
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-11 74.3 301 28.2
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.7e-11 74.3 178 34.3
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 2.2e-11 73.9 273 27.8
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 2.2e-11 73.9 237 30.0
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.8e-11 73.2 313 25.6
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 3.8e-11 73.2 262 28.2
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 8.4e-11 72.0 289 28.0
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 8.4e-11 72.0 237 28.3
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.4e-10 71.2 248 29.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.4e-10 71.2 225 30.2
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.9e-10 70.9 238 26.1
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.9e-10 70.9 80 47.5
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 2.4e-10 70.5 138 34.8
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 3.2e-10 70.1 306 27.5
FvH4_6g14711 Fragaria vesca HOM05D051550 ORTHO05D045480 3.2e-10 70.1 127 42.5
FAN14G4482 Fragaria x ananassa HOM05D051550 ORTHO05D045480 4.2e-10 69.7 127 42.5
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 4.2e-10 69.7 153 33.3
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 5.4e-10 69.3 229 26.6
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 5.4e-10 69.3 315 23.5
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.1e-10 68.9 169 30.2
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 7.1e-10 68.9 180 28.9
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.6e-09 67.8 235 28.5
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.1e-09 67.4 226 29.2
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.1e-09 67.4 169 30.2
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.5e-09 66.6 229 24.5
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.5e-09 66.6 235 28.5
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 6.0e-09 65.9 155 32.9
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 7.8e-09 65.5 111 37.8
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 1.0e-08 65.1 289 26.6
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.7e-08 64.3 305 26.2
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 2.3e-08 63.9 126 36.5
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.3e-08 63.9 258 24.8
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.3e-08 63.9 258 24.8
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.3e-08 63.9 133 31.6
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 3.0e-08 63.5 255 25.5
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 3.0e-08 63.5 77 40.3
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 3.9e-08 63.2 126 32.5
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 3.9e-08 63.2 93 34.4
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 8.7e-08 62.0 263 26.2
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 1.1e-07 61.6 91 35.2
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.9e-07 60.8 189 28.0
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 1.9e-07 60.8 151 29.8
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.9e-07 60.8 261 24.5
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 1.9e-07 60.8 87 36.8
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.9e-07 60.8 238 29.0
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 2.5e-07 60.5 231 26.0
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 4.3e-07 59.7 151 29.8
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 4.3e-07 59.7 135 31.1
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 7.3e-07 58.9 270 26.7
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 7.3e-07 58.9 75 40.0
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 7.3e-07 58.9 235 26.8
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 7.3e-07 58.9 89 36.0
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 9.6e-07 58.5 282 25.9
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 9.6e-07 58.5 236 27.1
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 1.3e-06 58.2 151 31.8
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 1.3e-06 58.2 182 28.6
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 1.6e-06 57.8 238 27.3
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-06 57.8 258 26.0
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 2.1e-06 57.4 126 31.0
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-06 57.0 253 30.8
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.8e-06 57.0 125 35.2
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 2.8e-06 57.0 101 32.7
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 3.6e-06 56.6 120 31.7
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 4.8e-06 56.2 110 39.1
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 6.2e-06 55.8 168 26.2
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.2e-06 55.8 80 36.2


User provided reference genes

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