Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 6.4e-171 604.0 303 100.0
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 4.5e-140 501.5 288 87.8
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.8e-41 172.6 316 42.7
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.4e-40 170.2 315 42.2
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.9e-39 164.9 310 42.3
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.7e-36 156.8 315 40.3
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.3e-35 154.5 325 39.1
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.9e-30 136.7 333 33.6
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 9.3e-29 131.7 323 32.2
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 4.3e-26 122.9 227 37.0
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.7e-26 122.5 298 33.6
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.6e-25 120.9 333 31.8
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.6e-25 120.9 236 36.4
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.8e-24 117.5 334 32.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.3e-24 115.9 332 31.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 5.3e-24 115.9 323 30.0
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 6.9e-24 115.5 228 34.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.2e-22 110.5 255 32.5
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 6.5e-22 109.0 326 31.6
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-21 108.2 223 36.3
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.9e-21 107.5 234 31.6
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 1.9e-21 107.5 267 31.8
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 7.2e-21 105.5 268 32.1
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.6e-20 104.4 329 29.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.6e-20 104.4 325 28.6
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 6.1e-20 102.4 325 30.5
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 6.1e-20 102.4 243 35.0
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.4e-19 101.3 253 31.2
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.3e-19 100.5 346 30.3
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 6.7e-19 99.0 326 27.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 6.7e-19 99.0 347 30.8
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.9e-18 97.4 342 30.7
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.5e-18 97.1 294 29.3
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.3e-18 96.3 235 29.8
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 5.7e-18 95.9 335 29.6
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 7.4e-18 95.5 367 25.9
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 2.8e-17 93.6 248 31.5
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 6.3e-17 92.4 258 32.6
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 8.2e-17 92.0 231 31.2
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.1e-16 91.7 328 28.7
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.4e-16 91.3 256 31.2
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.4e-16 91.3 354 27.4
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.1e-16 89.7 345 27.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 4.1e-16 89.7 256 30.1
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.9e-16 89.0 255 31.0
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.1e-16 88.6 94 48.9
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.1e-16 88.6 242 29.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.0e-15 87.4 222 29.3
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.0e-15 87.4 222 29.3
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.6e-15 87.0 311 28.9
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.5e-15 86.3 343 26.8
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.5e-15 86.3 195 33.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 5.9e-15 85.9 238 29.8
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 5.9e-15 85.9 338 26.0
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 7.7e-15 85.5 319 28.8
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 2.9e-14 83.6 360 27.5
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.9e-14 83.6 276 26.8
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 3.8e-14 83.2 262 27.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.0e-14 82.8 332 28.6
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 8.5e-14 82.0 339 28.9
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-13 81.6 358 26.3
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.1e-13 81.6 301 27.9
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.4e-13 81.3 316 26.6
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-13 80.9 225 31.1
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.9e-13 80.9 339 26.3
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.9e-13 80.9 293 28.0
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.5e-13 80.5 225 30.7
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 5.5e-13 79.3 327 27.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 5.5e-13 79.3 332 28.9
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 7.2e-13 79.0 261 27.2
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.4e-13 78.6 320 28.1
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 9.4e-13 78.6 322 28.6
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.2e-12 78.2 242 31.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.2e-12 78.2 343 26.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-12 77.8 239 29.3
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 1.6e-12 77.8 325 27.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.7e-12 77.0 239 30.1
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 3.6e-12 76.6 242 28.5
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.6e-12 76.6 233 28.8
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 4.7e-12 76.3 297 24.9
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 6.1e-12 75.9 282 28.0
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.0e-11 75.1 215 31.6
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-11 74.7 333 25.2
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-11 74.7 306 26.5
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.4e-11 74.7 327 26.6
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.4e-11 74.7 349 26.6
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.8e-11 74.3 298 26.8
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.3e-11 73.9 372 26.3
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.3e-11 73.9 327 26.6
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 3.0e-11 73.6 325 25.8
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 6.7e-11 72.4 318 24.2
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 8.8e-11 72.0 225 27.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 8.8e-11 72.0 230 26.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.1e-10 71.6 390 24.9
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.1e-10 71.6 333 26.1
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.5e-10 71.2 331 25.7
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 3.3e-10 70.1 208 29.8
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 5.7e-10 69.3 336 24.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 7.4e-10 68.9 270 27.0
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 9.7e-10 68.6 366 26.5
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.3e-09 68.2 373 26.8
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.7e-09 67.8 178 32.0
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.7e-09 66.6 118 31.4
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.7e-09 66.6 214 26.6
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 3.7e-09 66.6 232 28.9
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.8e-09 66.2 236 28.8
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 6.3e-09 65.9 321 24.9
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 8.2e-09 65.5 324 26.5
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 8.2e-09 65.5 119 33.6
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-08 65.1 175 28.6
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.1e-08 65.1 252 26.6
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 1.1e-08 65.1 327 25.1
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.4e-08 64.7 75 46.7
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.4e-08 64.7 342 25.4
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.8e-08 64.3 208 28.4
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 2.4e-08 63.9 317 24.3
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.1e-08 63.5 289 28.0
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.3e-08 62.8 321 25.5
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 9.1e-08 62.0 289 26.3
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 2.0e-07 60.8 139 30.9
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 3.4e-07 60.1 269 26.4
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 5.9e-07 59.3 239 25.1
FvH4_6g14711 Fragaria vesca HOM05D051550 ORTHO05D045480 5.9e-07 59.3 127 39.4
FAN14G4482 Fragaria x ananassa HOM05D051550 ORTHO05D045480 7.7e-07 58.9 127 39.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 1.0e-06 58.5 177 27.7
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.7e-06 57.8 195 28.7
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.7e-06 57.8 256 26.6
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.9e-06 57.0 326 25.2
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 3.8e-06 56.6 313 24.9
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 3.8e-06 56.6 214 24.3
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 6.5e-06 55.8 263 25.9
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 6.5e-06 55.8 289 28.4
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 8.5e-06 55.5 321 25.2
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 8.5e-06 55.5 85 34.1
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 8.5e-06 55.5 303 26.1


User provided reference genes

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