Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G361100 Prunus persica HOM05D003331 ORTHO05D003264 5.5e-99 364.4 194 100.0
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 4.4e-16 89.0 203 41.9
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 7.6e-16 88.2 213 38.5
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 1.9e-14 83.6 200 42.0
MD15G1008300 Malus domestica HOM05D003331 ORTHO05D003264 1.9e-14 83.6 188 45.7
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 1.7e-12 77.0 203 38.9
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 3.0e-12 76.3 208 37.5
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 3.0e-12 76.3 204 41.7
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 3.0e-12 76.3 198 37.9
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 3.9e-12 75.9 212 35.4
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 6.6e-12 75.1 189 37.6
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 8.7e-12 74.7 189 39.2
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 1.5e-11 73.9 189 40.2
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 1.9e-11 73.6 197 41.1
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 2.5e-11 73.2 198 36.9
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 5.6e-11 72.0 193 38.3
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 5.6e-11 72.0 206 37.4
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.6e-11 71.2 196 37.8
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.6e-10 70.5 201 33.3
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 4.8e-10 68.9 199 39.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 6.2e-10 68.6 202 37.6
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 8.1e-10 68.2 204 34.8
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 8.1e-10 68.2 214 33.2
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 8.1e-10 68.2 203 38.4
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 8.1e-10 68.2 189 35.4
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.1e-09 67.8 199 35.7
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 1.1e-09 67.8 201 34.8
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 1.8e-09 67.0 190 36.8
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.8e-09 67.0 193 37.8
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 2.4e-09 66.6 199 37.2
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 2.4e-09 66.6 189 33.3
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 3.1e-09 66.2 208 35.1
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 4.0e-09 65.9 212 36.8
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 5.3e-09 65.5 193 37.3
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 5.3e-09 65.5 207 38.2
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 5.3e-09 65.5 210 35.2
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 5.3e-09 65.5 190 36.3
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 6.9e-09 65.1 194 37.6
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 6.9e-09 65.1 186 39.8
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.0e-09 64.7 206 37.4
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-08 64.3 209 33.5
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 1.5e-08 63.9 193 38.9
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.5e-08 63.9 188 35.1
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.0e-08 63.5 188 36.2
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 2.6e-08 63.2 209 33.0
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 4.5e-08 62.4 209 33.0
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 4.5e-08 62.4 200 35.0
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 4.5e-08 62.4 200 35.0
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.5e-08 62.4 206 37.9
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 4.5e-08 62.4 188 34.6
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 5.8e-08 62.0 179 34.1
Ah.03g143180 Amaranthus hybridus HOM05D000531 ORTHO05D003264 5.8e-08 62.0 176 31.8
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.8e-08 62.0 189 36.0
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 7.6e-08 61.6 189 35.4
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 7.6e-08 61.6 198 35.4
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 9.9e-08 61.2 191 35.6
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 9.9e-08 61.2 209 34.0
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.3e-07 60.8 202 37.6
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 1.7e-07 60.5 200 34.0
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.7e-07 60.5 191 36.6
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 2.2e-07 60.1 200 34.0
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 2.2e-07 60.1 208 32.2
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 2.9e-07 59.7 191 36.6
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 3.8e-07 59.3 177 33.9
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 4.9e-07 58.9 198 33.8
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.4e-07 58.5 204 33.8
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 6.4e-07 58.5 196 35.2
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 8.4e-07 58.2 199 30.7
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 8.4e-07 58.2 200 32.5
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 8.4e-07 58.2 191 34.0
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 1.1e-06 57.8 192 32.8
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 1.1e-06 57.8 178 34.3
FAN15G0714 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.4e-06 57.4 198 35.4
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 1.9e-06 57.0 197 33.0
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 1.9e-06 57.0 189 33.9
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.9e-06 57.0 185 37.3
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 1.9e-06 57.0 188 33.5
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.4e-06 56.6 195 32.8
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 2.4e-06 56.6 203 33.5
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 3.2e-06 56.2 223 36.8
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.2e-06 56.2 180 36.1
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.2e-06 56.2 176 35.2
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 3.2e-06 56.2 187 35.3
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 3.2e-06 56.2 186 32.8
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.2e-06 55.8 189 33.9
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 5.4e-06 55.5 210 32.9
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 5.4e-06 55.5 209 33.5
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 7.1e-06 55.1 179 35.2
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 7.1e-06 55.1 213 32.4
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 7.1e-06 55.1 206 33.5
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 9.3e-06 54.7 191 34.6
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 9.3e-06 54.7 196 34.7


User provided reference genes

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