Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.8e-76 289.3 154 100.0
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 2.4e-65 252.3 153 88.9
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.5e-62 242.3 153 76.5
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.1e-61 239.2 152 82.9
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 5.2e-60 234.6 152 81.6
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 5.2e-60 234.6 155 81.9
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.6e-59 232.3 152 82.2
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.6e-56 223.0 156 71.8
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.5e-54 216.5 156 69.9
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 3.3e-54 215.3 157 75.2
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.2e-53 213.4 155 70.3
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 2.8e-53 212.2 155 73.5
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 6.1e-53 211.1 155 69.7
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.4e-52 209.9 144 71.5
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 1.8e-52 209.5 148 76.4
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 3.1e-52 208.8 144 72.9
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 4.0e-52 208.4 144 77.8
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 5.2e-52 208.0 156 69.2
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 6.8e-52 207.6 150 70.7
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 6.8e-52 207.6 157 72.0
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.2e-51 206.8 127 77.2
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 2.0e-51 206.1 155 69.0
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 9.8e-51 203.8 152 65.1
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 9.8e-51 203.8 152 67.8
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.3e-50 203.4 123 80.5
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 2.2e-50 202.6 155 70.3
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.2e-50 202.6 127 76.4
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 2.9e-50 202.2 127 75.6
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.4e-49 199.9 156 67.9
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 1.4e-49 199.9 157 66.9
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 3.2e-49 198.7 127 74.8
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 3.2e-49 198.7 128 77.3
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 7.0e-49 197.6 130 77.7
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 7.0e-49 197.6 123 74.8
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 1.2e-48 196.8 153 66.7
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.2e-48 196.8 134 74.6
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.2e-48 196.8 129 73.6
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 1.6e-48 196.4 137 70.8
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.0e-48 196.1 123 75.6
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.0e-48 196.1 127 72.4
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 2.0e-48 196.1 157 66.2
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.7e-48 195.7 154 63.6
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 3.5e-48 195.3 125 77.6
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 4.6e-48 194.9 152 66.4
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 4.6e-48 194.9 136 72.1
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 6.0e-48 194.5 138 68.8
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 7.8e-48 194.1 127 74.0
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 7.8e-48 194.1 129 73.6
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 1.0e-47 193.7 156 65.4
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 1.0e-47 193.7 156 65.4
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.0e-47 193.7 156 64.1
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 1.0e-47 193.7 126 77.8
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.3e-47 193.4 125 74.4
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.7e-47 193.0 127 72.4
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.7e-47 193.0 128 77.3
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.7e-47 193.0 156 62.8
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.3e-47 192.6 152 67.1
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.3e-47 192.6 124 72.6
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.3e-47 192.6 156 62.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 3.0e-47 192.2 154 66.2
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 3.9e-47 191.8 155 65.8
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 5.0e-47 191.4 153 66.7
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 6.6e-47 191.0 156 64.7
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 6.6e-47 191.0 156 62.2
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 6.6e-47 191.0 127 72.4
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 8.6e-47 190.7 156 65.4
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 8.6e-47 190.7 151 66.9
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.1e-46 190.3 156 64.7
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.1e-46 190.3 123 74.0
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.5e-46 189.9 129 69.8
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.5e-46 189.9 131 69.5
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.9e-46 189.5 127 70.1
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.3e-46 188.7 126 69.8
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 3.3e-46 188.7 126 70.6
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 4.3e-46 188.3 127 75.6
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 5.6e-46 188.0 130 72.3
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.2e-45 186.8 128 71.1
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.6e-45 186.4 156 67.9
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 2.8e-45 185.7 124 70.2
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 2.8e-45 185.7 127 77.2
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 3.6e-45 185.3 127 77.2
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 8.1e-45 184.1 123 69.9
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 8.1e-45 184.1 131 75.6
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.8e-44 183.0 148 64.2
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 4.0e-44 181.8 154 65.6
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.5e-43 179.9 137 64.2
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 5.8e-43 177.9 128 77.3
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 4.9e-42 174.9 121 71.1
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 8.3e-42 174.1 124 69.4
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.9e-41 172.9 141 63.8
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 1.9e-41 172.9 145 67.6
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.4e-41 172.6 147 59.2
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 3.2e-41 172.2 135 63.7
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 5.4e-41 171.4 126 75.4
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 9.2e-41 170.6 117 70.1
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.2e-40 170.2 144 60.4
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.7e-40 169.1 126 69.8
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 4.6e-40 168.3 146 60.3
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.0e-39 167.2 151 58.9
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 1.3e-39 166.8 129 69.0
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.9e-38 162.9 158 57.0
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 3.6e-37 158.7 126 63.5
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 3.6e-37 158.7 126 60.3
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 1.1e-36 157.1 134 59.7
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 9.9e-35 150.6 129 60.5
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 5.4e-33 144.8 155 52.3
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 7.1e-33 144.4 155 52.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 4.3e-30 135.2 122 52.5
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 3.6e-29 132.1 90 72.2
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 5.2e-28 128.3 122 47.5
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 2.9e-26 122.5 103 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 3.8e-26 122.1 120 52.5
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 7.8e-24 114.4 124 46.0
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 2.5e-22 109.4 89 68.5
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 7.3e-22 107.8 117 45.3
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 2.1e-21 106.3 142 47.9
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 3.6e-21 105.5 90 56.7
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 5.3e-20 101.7 151 42.4
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 5.8e-19 98.2 85 54.1
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.4e-17 93.6 110 41.8
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.6e-16 90.1 80 51.2
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 1.6e-13 80.1 119 40.3
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 1.7e-10 70.1 85 52.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 8.7e-07 57.8 49 63.3
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 9.6e-06 54.3 52 57.7


User provided reference genes

Program Settings