Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 6.0e-98 360.9 192 100.0
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 7.6e-77 290.8 197 81.7
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 6.4e-76 287.7 197 81.2
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.3e-55 220.3 204 66.2
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 6.9e-54 214.5 206 64.6
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.7e-53 211.1 197 65.5
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 8.5e-52 207.6 206 65.5
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-51 207.2 197 64.0
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 1.4e-51 206.8 196 65.3
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.4e-51 206.8 199 62.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.9e-51 206.5 198 65.2
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.9e-51 206.5 206 65.0
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 2.5e-51 206.1 196 63.8
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 3.2e-51 205.7 195 65.1
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 7.2e-51 204.5 203 63.1
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 9.4e-51 204.1 198 64.6
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.2e-50 203.8 205 62.4
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.2e-50 203.8 194 66.0
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 6.1e-50 201.4 193 62.7
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 7.9e-50 201.1 202 61.4
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 3.0e-49 199.1 200 59.0
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 5.1e-49 198.4 191 62.8
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 2.6e-48 196.1 187 66.8
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 5.7e-48 194.9 202 61.4
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 7.4e-48 194.5 197 64.5
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 9.7e-48 194.1 185 63.8
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.7e-47 193.4 187 64.2
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-46 190.7 194 61.3
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.8e-46 189.9 192 60.9
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.5e-45 186.8 184 63.0
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.0e-45 186.4 190 60.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 3.4e-45 185.7 198 60.1
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 5.9e-45 184.9 194 57.2
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.0e-44 184.1 188 58.0
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.7e-44 183.3 189 62.4
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.9e-44 182.6 184 60.3
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 3.8e-44 182.2 185 60.5
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 3.8e-44 182.2 194 60.3
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 3.8e-44 182.2 184 60.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-43 180.6 194 59.3
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.1e-43 180.6 194 59.3
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 1.4e-43 180.3 181 61.9
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.9e-43 179.9 185 61.1
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 3.2e-43 179.1 201 57.7
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 4.2e-43 178.7 195 61.5
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 4.2e-43 178.7 192 57.8
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 4.2e-43 178.7 204 52.9
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.2e-42 177.2 250 50.0
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 1.2e-42 177.2 187 58.3
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 2.7e-42 176.0 196 58.2
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 6.1e-42 174.9 193 57.5
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 6.1e-42 174.9 183 59.0
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 2.3e-41 172.9 196 57.7
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 3.0e-41 172.6 188 57.4
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.9e-41 172.2 183 57.9
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 5.2e-41 171.8 186 58.1
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 5.2e-41 171.8 188 56.9
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.1e-40 170.6 195 55.4
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.0e-40 169.9 183 55.2
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.0e-40 169.9 194 54.6
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.0e-40 169.9 194 55.2
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.0e-40 169.9 198 53.5
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.6e-40 169.5 190 56.8
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 4.4e-40 168.7 190 56.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 9.7e-40 167.5 184 53.8
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 9.7e-40 167.5 182 57.7
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 2.8e-39 166.0 191 54.5
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 6.3e-39 164.9 198 52.5
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 6.3e-39 164.9 195 55.4
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 6.3e-39 164.9 213 51.6
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 8.2e-39 164.5 219 50.7
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.1e-38 164.1 181 59.7
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 1.1e-38 164.1 199 52.3
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.1e-38 164.1 184 57.1
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 3.1e-38 162.5 183 55.2
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 7.0e-38 161.4 194 52.6
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 7.0e-38 161.4 182 56.0
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-37 160.6 183 54.6
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-37 160.6 183 54.1
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.2e-37 160.6 183 54.6
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 1.6e-37 160.2 183 54.1
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.6e-37 160.2 183 54.1
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.2e-36 156.4 189 54.5
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.2e-36 156.4 204 49.0
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 2.9e-36 156.0 204 48.5
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 5.0e-36 155.2 182 54.4
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 5.0e-36 155.2 204 52.0
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.1e-35 154.1 182 52.2
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 3.2e-35 152.5 208 50.5
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 5.5e-35 151.8 195 53.3
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.2e-34 150.6 224 46.9
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.2e-34 150.6 202 49.5
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 1.6e-34 150.2 182 52.2
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 2.7e-34 149.4 195 51.8
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.4e-33 147.1 183 50.3
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 3.0e-33 146.0 193 50.8
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 4.0e-33 145.6 193 45.6
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 6.7e-33 144.8 186 50.0
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 2.6e-32 142.9 217 48.4
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 4.4e-32 142.1 184 51.6
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 5.7e-32 141.7 176 50.0
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 7.5e-32 141.4 190 50.0
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 7.5e-32 141.4 181 49.2
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-31 140.6 229 44.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-31 140.6 229 44.5
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.2e-31 139.8 182 49.5
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-30 137.5 159 57.2
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 3.1e-30 136.0 176 49.4
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 3.1e-30 136.0 176 49.4
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.2e-28 129.8 170 54.1
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.5e-27 126.3 182 45.6
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.5e-27 126.3 201 46.8
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 9.4e-27 124.4 156 50.0
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.1e-26 123.2 181 50.8
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 5.2e-25 118.6 187 41.2
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 9.8e-24 114.4 128 59.4
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.7e-23 113.6 167 45.5
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.3e-23 111.3 162 48.8
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 7.0e-22 108.2 188 46.3
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 7.7e-21 104.8 145 54.5
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 4.2e-19 99.0 168 42.3
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 9.5e-19 97.8 191 39.3
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 2.8e-18 96.3 117 55.6
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 8.0e-18 94.7 185 38.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 4.0e-17 92.4 178 35.4
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 6.3e-15 85.1 116 52.6
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 8.3e-15 84.7 63 68.3
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 1.6e-13 80.5 180 32.2
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.6e-13 80.5 169 36.7
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 5.0e-12 75.5 176 31.8
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 1.2e-10 70.9 109 43.1
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 4.0e-09 65.9 117 39.3
BcaB07g29688 Brassica carinata HOM05D005391 ORTHO05D006694 5.4e-06 55.5 34 67.6


User provided reference genes

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