Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 7.0e-181 637.1 310 100.0
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.7e-158 562.8 306 88.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.7e-147 526.2 304 83.2
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.5e-146 522.3 308 79.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 4.3e-146 521.5 308 79.5
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.1e-144 516.9 306 81.4
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 6.6e-139 497.7 309 76.1
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.5e-138 496.5 308 75.0
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 9.6e-138 493.8 309 74.8
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 1.2e-137 493.4 306 75.5
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 2.1e-137 492.7 310 75.2
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 2.8e-137 492.3 314 74.8
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 6.2e-137 491.1 308 76.3
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 6.2e-137 491.1 310 74.5
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.8e-136 489.6 310 76.5
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.8e-136 489.6 306 76.8
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 6.9e-136 487.6 308 74.4
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 2.0e-135 486.1 310 73.5
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.0e-135 486.1 307 74.9
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.6e-135 485.7 310 74.2
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 4.4e-135 485.0 310 72.9
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 7.6e-135 484.2 307 74.3
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 7.6e-135 484.2 305 74.4
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 2.2e-134 482.6 308 75.0
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.9e-134 482.3 305 75.4
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 6.4e-134 481.1 305 75.4
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 8.4e-134 480.7 308 73.4
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 2.4e-133 479.2 310 72.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 7.1e-133 477.6 304 73.4
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 9.3e-133 477.2 314 74.2
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 3.5e-132 475.3 310 73.2
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.5e-132 475.3 281 79.7
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.0e-131 473.8 324 70.7
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 1.7e-131 473.0 310 72.6
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.7e-131 473.0 310 72.6
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.7e-131 473.0 308 70.8
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 2.3e-131 472.6 308 73.7
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 3.0e-131 472.2 310 73.2
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 3.0e-131 472.2 310 71.9
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-130 469.5 308 73.1
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.5e-130 469.2 308 71.1
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.3e-130 468.8 308 71.1
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 2.1e-129 466.1 345 67.5
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 4.8e-129 464.9 307 72.6
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 6.2e-129 464.5 337 67.1
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 6.2e-129 464.5 311 71.7
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 8.1e-129 464.2 307 69.7
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.1e-128 462.2 306 71.9
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 5.3e-128 461.5 302 72.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.2e-126 456.1 306 70.9
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.9e-126 455.7 302 68.9
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 3.8e-126 455.3 306 69.3
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.8e-126 455.3 282 79.4
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.1e-125 453.8 310 71.0
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 1.4e-125 453.4 310 71.0
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 1.9e-125 453.0 310 69.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.9e-125 453.0 310 70.6
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.4e-125 452.6 310 67.7
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 3.2e-125 452.2 309 69.3
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 4.2e-125 451.8 339 64.6
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 5.4e-125 451.4 310 71.0
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 5.4e-125 451.4 310 67.4
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 5.4e-125 451.4 308 70.5
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 5.4e-125 451.4 308 67.5
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 2.1e-124 449.5 282 78.0
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 2.7e-124 449.1 298 72.5
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 6.0e-124 448.0 310 70.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.8e-123 446.4 315 66.7
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.8e-123 446.4 308 69.8
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.9e-122 443.0 305 68.9
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 2.5e-122 442.6 302 66.9
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 2.5e-122 442.6 308 67.9
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.3e-122 441.8 308 70.1
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.6e-121 439.9 308 67.5
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 8.1e-121 437.6 276 71.7
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.4e-120 436.8 316 66.1
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 6.9e-120 434.5 301 69.1
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 6.9e-120 434.5 306 67.6
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.0e-119 433.0 310 68.1
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 2.0e-119 433.0 304 67.1
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 3.4e-119 432.2 311 67.2
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 7.6e-119 431.0 337 62.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.3e-118 430.3 313 66.5
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.1e-117 427.2 307 64.5
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 9.3e-117 424.1 350 61.1
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.1e-116 422.9 283 72.8
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.6e-113 413.3 283 69.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.5e-111 406.8 328 60.7
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.3e-110 403.7 366 55.5
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.5e-110 401.4 285 69.5
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.4e-109 400.2 309 63.1
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 9.7e-106 387.5 311 62.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.8e-99 366.7 304 60.5
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 1.3e-97 360.5 307 57.7
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 5.3e-96 355.1 285 63.5
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 6.9e-96 354.8 310 58.4
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 6.9e-96 354.8 313 56.5
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 4.5e-95 352.1 302 57.0
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 4.5e-95 352.1 302 57.0
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 2.2e-94 349.7 273 60.4
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.2e-93 345.9 306 57.5
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 3.7e-89 332.4 221 71.0
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.1e-88 329.3 224 68.3
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 9.1e-88 327.8 283 56.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.9e-86 322.8 298 54.4
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.6e-84 317.0 237 64.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 2.9e-78 296.2 198 69.7
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.8e-72 276.9 299 46.8
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 4.5e-71 272.3 194 65.5
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.7e-70 270.4 192 69.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.2e-70 270.0 200 66.5
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.5e-69 267.3 167 76.0
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 5.5e-69 265.4 197 65.0
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 9.4e-69 264.6 239 59.0
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 9.1e-64 248.1 215 57.2
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.7e-55 219.9 137 76.6
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 4.5e-55 219.2 308 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 3.8e-54 216.1 208 52.4
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 7.3e-53 211.8 342 36.5
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.1e-48 196.1 153 57.5
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 7.0e-48 195.3 168 58.3
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.3e-41 174.5 131 64.9
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.8e-36 156.8 293 34.8
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.7e-36 156.0 111 64.0
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.5e-34 151.0 113 61.1
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.7e-33 147.5 306 33.3
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.1e-29 134.8 271 31.4
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 8.1e-28 128.6 83 72.3
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 3.8e-25 119.8 100 53.0
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 6.4e-17 92.4 81 58.0
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.3e-13 80.1 63 61.9
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 4.8e-12 76.3 179 31.3
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 4.8e-12 76.3 62 53.2
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.4e-11 73.9 79 48.1
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 2.2e-09 67.4 36 88.9
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.9e-08 64.3 70 47.1
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.2e-08 63.2 55 52.7


User provided reference genes

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