Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 2.5e-38 161.4 68 100.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.2e-34 148.3 65 93.8
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.1e-33 146.0 67 86.6
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.1e-33 146.0 67 85.1
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 2.4e-33 144.8 66 87.9
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.1e-33 144.1 65 90.8
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.5e-32 142.1 67 85.1
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.0e-32 141.7 65 86.2
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.0e-32 141.7 65 86.2
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.0e-32 141.7 65 86.2
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.0e-32 141.7 65 86.2
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 3.5e-32 141.0 69 85.5
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 5.9e-32 140.2 66 86.4
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.7e-32 139.8 65 86.2
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.0e-31 139.4 67 80.6
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.3e-31 139.0 66 84.8
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 1.7e-31 138.7 66 81.8
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 1.7e-31 138.7 66 81.8
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.7e-31 138.7 65 89.2
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 2.2e-31 138.3 67 88.1
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 2.9e-31 137.9 68 85.3
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 3.8e-31 137.5 68 85.3
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 3.8e-31 137.5 65 86.2
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 5.0e-31 137.1 65 84.6
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 6.5e-31 136.7 65 84.6
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 6.5e-31 136.7 65 84.6
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 6.5e-31 136.7 65 83.1
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 8.5e-31 136.3 70 82.9
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 8.5e-31 136.3 63 87.3
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.1e-30 136.0 64 84.4
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.1e-30 136.0 65 84.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.1e-30 136.0 65 84.6
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.1e-30 136.0 64 84.4
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.4e-30 135.6 65 84.6
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.9e-30 135.2 64 82.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.9e-30 135.2 61 90.2
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.2e-30 134.4 65 83.1
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.2e-30 134.4 65 83.1
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 3.2e-30 134.4 65 83.1
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.2e-30 134.4 62 88.7
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 4.2e-30 134.0 66 84.8
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.2e-30 134.0 65 83.1
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 4.2e-30 134.0 64 82.8
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 5.5e-30 133.7 62 85.5
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 7.2e-30 133.3 65 84.6
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 7.2e-30 133.3 66 83.3
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 1.2e-29 132.5 64 82.8
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.2e-29 132.5 67 80.6
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.6e-29 132.1 67 82.1
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.6e-29 132.1 65 81.5
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 2.1e-29 131.7 66 81.8
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 2.7e-29 131.3 67 79.1
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 2.7e-29 131.3 67 80.6
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 2.7e-29 131.3 67 79.1
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.7e-29 131.3 63 85.7
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 4.7e-29 130.6 65 83.1
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 4.7e-29 130.6 67 80.6
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 4.7e-29 130.6 62 82.3
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 8.0e-29 129.8 63 84.1
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 8.0e-29 129.8 62 82.3
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 8.0e-29 129.8 63 84.1
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 1.0e-28 129.4 58 87.9
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 1.0e-28 129.4 61 85.2
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 1.4e-28 129.0 68 79.4
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 2.3e-28 128.3 62 82.3
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 3.0e-28 127.9 67 76.1
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 3.9e-28 127.5 68 79.4
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 6.7e-28 126.7 67 76.1
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 8.8e-28 126.3 65 83.1
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 2.0e-27 125.2 68 76.5
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 2.6e-27 124.8 67 74.6
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 2.6e-27 124.8 64 75.0
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.6e-27 124.8 65 73.8
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.6e-27 124.8 65 73.8
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 3.3e-27 124.4 65 76.9
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 4.4e-27 124.0 64 78.1
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 5.7e-27 123.6 66 75.8
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 9.7e-27 122.9 65 75.4
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 9.7e-27 122.9 65 75.4
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 9.7e-27 122.9 65 75.4
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 9.7e-27 122.9 65 75.4
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 9.7e-27 122.9 65 75.4
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 1.7e-26 122.1 69 72.5
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 1.4e-25 119.0 67 74.6
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 5.3e-25 117.1 69 75.4
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 9.1e-25 116.3 59 74.6
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 9.1e-25 116.3 65 72.3
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 9.1e-25 116.3 65 72.3
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 9.1e-25 116.3 65 72.3
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.2e-24 115.9 52 82.7
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.6e-24 115.5 62 74.2
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 4.5e-24 114.0 62 74.2
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.7e-23 112.1 51 92.2
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 8.5e-23 109.8 50 92.0
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 1.5e-22 109.0 62 69.4
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 4.2e-22 107.5 50 88.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 5.5e-22 107.1 52 84.6
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 5.5e-22 107.1 62 71.0
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 5.5e-22 107.1 62 71.0
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 1.2e-21 105.9 51 82.4
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 1.6e-21 105.5 50 84.0
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.4e-20 102.4 67 62.7
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 2.3e-20 101.7 67 61.2
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.5e-19 99.0 63 69.8
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 2.6e-19 98.2 51 82.4
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 3.4e-19 97.8 51 82.4
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 3.7e-18 94.4 53 79.2
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 4.8e-18 94.0 60 58.3
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 6.3e-18 93.6 48 79.2
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 8.3e-18 93.2 60 60.0
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 5.3e-17 90.5 53 71.7
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 5.0e-15 84.0 50 70.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 7.2e-14 80.1 52 71.2
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.5e-11 72.4 51 66.7
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.0e-11 72.0 41 75.6
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 2.0e-11 72.0 51 60.8
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.7e-11 70.5 34 79.4
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 1.3e-10 69.3 34 76.5
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.2e-10 68.6 36 77.8
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.8e-10 68.2 36 77.8
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.8e-10 68.2 36 77.8
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.7e-10 67.8 36 75.0
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 4.8e-10 67.4 38 73.7
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.8e-09 65.5 32 84.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 3.1e-09 64.7 32 75.0
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 7.0e-09 63.5 32 78.1
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 9.1e-09 63.2 33 72.7


User provided reference genes

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