Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 7.1e-78 293.9 151 100.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 6.9e-57 224.2 154 77.3
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-56 222.6 153 76.5
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 4.2e-46 188.3 148 73.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.2e-39 166.0 131 70.2
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.2e-39 166.0 131 70.2
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.0e-39 164.9 145 65.5
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.0e-39 164.9 145 65.5
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.6e-37 158.7 120 68.3
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 5.1e-36 154.8 118 67.8
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 6.7e-36 154.5 119 64.7
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 6.7e-36 154.5 120 68.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.6e-34 149.8 113 65.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.2e-34 149.4 114 68.4
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 4.8e-34 148.3 87 78.2
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 8.2e-34 147.5 113 65.5
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.4e-33 146.7 131 56.5
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.8e-33 146.4 118 62.7
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.2e-32 143.7 81 80.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.5e-32 143.3 86 74.4
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.5e-32 143.3 80 80.0
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.5e-32 143.3 81 80.2
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.5e-32 143.3 117 61.5
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.0e-32 142.9 119 63.0
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.0e-32 142.9 115 61.7
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.6e-32 142.5 118 61.9
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 4.5e-32 141.7 144 55.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 4.5e-32 141.7 158 51.3
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 5.9e-32 141.4 118 61.0
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 7.7e-32 141.0 98 70.4
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.3e-31 140.2 111 64.9
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.3e-31 140.2 113 61.1
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.2e-31 139.4 123 61.0
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 2.9e-31 139.0 149 51.0
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 3.8e-31 138.7 92 68.5
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.8e-31 138.7 112 61.6
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 5.0e-31 138.3 122 60.7
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 8.5e-31 137.5 117 58.1
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.1e-30 137.1 120 63.3
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.4e-30 136.7 116 59.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.4e-30 136.7 131 57.3
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 3.2e-30 135.6 120 55.8
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 5.5e-30 134.8 137 51.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 5.5e-30 134.8 137 51.1
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.2e-30 134.4 108 59.3
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 9.4e-30 134.0 120 55.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 9.4e-30 134.0 137 54.7
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.4e-30 134.0 124 58.1
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.6e-29 133.3 131 58.0
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.9e-29 131.0 108 57.4
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 7.9e-29 131.0 108 57.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.0e-28 130.6 136 53.7
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.4e-28 130.2 130 53.1
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.8e-28 129.8 123 57.7
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.8e-28 129.8 80 73.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 3.0e-28 129.0 114 58.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.9e-28 128.6 94 66.0
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 8.8e-28 127.5 144 52.1
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 8.8e-28 127.5 128 53.9
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.1e-27 127.1 84 67.9
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.1e-27 127.1 112 59.8
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.1e-27 127.1 110 56.4
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.5e-27 126.7 123 57.7
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.0e-27 126.3 148 48.0
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.0e-27 126.3 123 56.9
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.6e-27 125.9 126 50.8
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 2.6e-27 125.9 126 51.6
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 3.3e-27 125.6 72 81.9
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 5.7e-27 124.8 121 57.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 5.7e-27 124.8 137 47.4
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.7e-27 124.8 135 48.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 7.4e-27 124.4 137 48.2
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 7.4e-27 124.4 77 74.0
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 9.7e-27 124.0 77 74.0
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 9.7e-27 124.0 120 51.7
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 9.7e-27 124.0 104 57.7
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.3e-26 123.6 77 74.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.7e-26 123.2 88 67.0
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.2e-26 122.9 76 75.0
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.2e-26 122.9 119 53.8
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.2e-26 122.9 119 57.1
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.8e-26 122.5 139 50.4
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.8e-26 121.7 128 50.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.4e-25 120.2 125 52.8
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.4e-25 120.2 140 46.4
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.4e-25 119.4 115 56.5
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.1e-25 119.0 72 72.2
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.3e-25 118.2 132 48.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 5.3e-25 118.2 90 61.1
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 5.3e-25 118.2 116 56.9
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 6.9e-25 117.9 120 54.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 9.1e-25 117.5 113 58.4
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 9.1e-25 117.5 121 53.7
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.2e-24 117.1 93 61.3
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.5e-24 116.7 149 47.7
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.0e-24 116.3 134 48.5
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 2.0e-24 116.3 80 65.0
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.0e-24 116.3 130 50.0
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.6e-24 115.9 165 41.8
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 2.6e-24 115.9 113 49.6
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.4e-24 115.5 122 55.7
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.4e-24 115.5 84 67.9
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 5.9e-24 114.8 122 54.1
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.3e-23 113.6 79 68.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.3e-23 113.6 107 58.9
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.3e-23 113.6 122 53.3
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.7e-23 113.2 122 52.5
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.2e-23 112.8 137 47.4
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.2e-23 112.8 88 62.5
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 5.0e-23 111.7 132 51.5
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.5e-23 111.3 68 70.6
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 6.5e-23 111.3 122 46.7
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 8.5e-23 110.9 134 47.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 1.9e-22 109.8 132 44.7
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 3.2e-22 109.0 82 61.0
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.2e-22 109.0 122 46.7
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 4.2e-22 108.6 117 55.6
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 4.2e-22 108.6 125 49.6
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 7.2e-22 107.8 160 46.2
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 7.2e-22 107.8 79 64.6
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.2e-21 107.1 113 47.8
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-21 107.1 79 64.6
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.6e-21 106.7 107 54.2
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 4.7e-21 105.1 149 43.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.0e-20 104.0 108 49.1
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.0e-20 104.0 108 49.1
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.0e-20 104.0 82 56.1
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.8e-20 103.2 75 61.3
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 5.2e-20 101.7 107 54.2
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 7.4e-19 97.8 103 51.5
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 1.7e-18 96.7 73 58.9
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.7e-18 96.7 77 54.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.4e-17 92.8 111 50.5
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.4e-17 92.8 111 50.5
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.1e-17 92.4 117 47.9
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 9.1e-17 90.9 88 56.8
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.6e-16 89.4 116 43.1
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 3.5e-16 89.0 118 40.7
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.5e-16 88.6 114 43.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 5.0e-15 85.1 115 45.2
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-14 82.0 84 48.8
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-14 82.0 84 48.8
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 4.1e-09 65.5 85 43.5
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.9e-08 61.6 75 46.7
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.0e-07 60.8 77 44.2
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.5e-06 57.0 76 43.4


User provided reference genes

Program Settings