Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 5.0e-268 927.2 461 100.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 8.2e-202 707.2 469 76.1
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.4e-185 652.5 461 70.5
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 5.3e-185 651.4 462 70.8
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.2e-184 650.2 461 70.9
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.0e-184 649.4 449 72.4
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 5.9e-184 647.9 452 69.5
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.3e-183 646.7 442 71.9
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 1.7e-183 646.4 461 70.1
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.8e-183 645.2 461 70.3
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.8e-183 645.2 462 70.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 3.8e-183 645.2 462 70.1
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 6.5e-183 644.4 451 71.6
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 6.5e-183 644.4 441 72.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.5e-182 643.3 462 70.1
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 5.5e-182 641.3 461 70.3
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 5.5e-182 641.3 444 71.2
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.7e-181 639.0 463 68.3
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.3e-180 636.0 454 71.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 4.0e-180 635.2 460 68.7
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.1e-179 633.6 462 68.6
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.5e-179 633.3 446 70.2
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 2.6e-179 632.5 441 71.0
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 2.6e-179 632.5 452 69.9
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 9.7e-179 630.6 439 71.1
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 2.8e-178 629.0 451 69.2
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.7e-178 628.6 461 66.4
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 6.3e-178 627.9 453 68.9
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.1e-177 627.1 442 68.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 4.1e-177 625.2 461 69.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.2e-176 623.6 463 67.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.2e-175 619.4 462 68.8
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 1.9e-174 616.3 462 66.7
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 7.2e-174 614.4 438 69.2
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.2e-173 613.6 461 65.7
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.1e-173 612.8 460 66.3
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 4.7e-173 611.7 461 65.9
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 8.0e-173 610.9 461 65.9
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.0e-172 610.5 465 67.7
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-172 610.1 439 67.7
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.4e-172 610.1 447 68.0
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.3e-172 609.4 461 65.9
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 2.3e-172 609.4 448 67.4
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 3.0e-172 609.0 447 67.6
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 8.8e-172 607.4 457 67.0
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 8.8e-172 607.4 452 66.2
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.2e-171 607.1 461 67.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-171 606.3 439 67.0
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 2.0e-171 606.3 444 66.9
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 3.4e-171 605.5 447 66.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.4e-171 605.5 446 66.8
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 5.7e-171 604.7 448 66.7
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 5.7e-171 604.7 449 65.7
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 7.5e-171 604.4 448 67.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 7.5e-171 604.4 439 67.7
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 7.5e-171 604.4 456 65.4
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 7.5e-171 604.4 456 66.0
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.3e-170 603.6 448 67.2
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 2.2e-170 602.8 450 65.8
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.8e-170 602.4 439 65.8
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 2.8e-170 602.4 459 66.7
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 4.8e-170 601.7 450 65.6
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 4.8e-170 601.7 461 64.2
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 8.3e-170 600.9 448 66.5
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.8e-169 599.7 450 65.6
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 3.1e-169 599.0 441 66.2
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 4.1e-169 598.6 446 66.4
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 9.1e-169 597.4 439 66.7
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-168 597.0 439 66.1
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.0e-168 596.3 454 66.3
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.7e-168 595.9 449 65.5
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.5e-168 595.5 454 64.3
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 5.9e-168 594.7 463 64.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.8e-167 592.0 442 64.7
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.8e-167 592.0 435 66.0
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.0e-167 591.7 453 65.3
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.0e-167 591.7 453 65.3
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 6.5e-167 591.3 447 66.2
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.5e-167 591.3 451 64.3
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 5.5e-166 588.2 455 64.8
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 9.4e-166 587.4 439 66.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 9.4e-166 587.4 439 66.3
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.6e-165 586.6 457 63.9
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 1.0e-164 583.9 441 64.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.8e-164 583.2 454 62.1
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.3e-164 582.8 448 63.8
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 5.2e-164 581.6 447 63.5
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 6.8e-164 581.3 462 62.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.3e-162 577.0 450 61.6
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.7e-162 576.6 465 63.7
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.4e-161 573.5 450 61.1
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.8e-161 573.2 442 64.5
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.1e-161 572.4 462 61.9
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 9.2e-161 570.9 459 62.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.2e-160 570.5 440 65.0
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 2.3e-159 566.2 463 63.3
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.9e-158 563.1 462 60.6
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.3e-158 561.2 459 61.9
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-157 560.5 461 61.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.4e-156 557.0 459 61.7
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.0e-156 555.8 455 60.0
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 3.4e-155 552.4 443 63.0
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.0e-153 544.7 444 62.6
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.6e-152 543.5 461 62.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.5e-150 536.2 439 62.4
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 9.5e-150 534.3 444 59.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.2e-148 528.5 459 58.4
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.9e-146 522.7 446 57.4
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-144 517.3 459 54.9
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.3e-143 513.8 458 54.8
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.7e-143 513.5 465 58.9
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 3.9e-143 512.3 438 57.1
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.9e-142 510.0 449 55.5
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 2.5e-142 509.6 461 53.8
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 4.3e-142 508.8 428 63.3
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.4e-140 503.8 461 52.9
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 9.8e-139 497.7 383 66.8
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.3e-135 486.5 436 54.6
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.3e-135 486.5 239 100.0
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.8e-130 469.2 420 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 4.4e-123 445.7 447 51.9
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 6.4e-114 415.2 335 63.6
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.2e-113 412.9 438 50.0
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.9e-110 403.7 439 46.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 6.2e-109 398.7 449 43.9
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 5.3e-108 395.6 323 60.7
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.6e-107 391.7 276 67.0
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 5.1e-103 379.0 454 48.2
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.4e-100 370.9 459 47.3
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-100 370.5 373 49.9
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 8.7e-95 351.7 464 42.0
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.6e-85 320.9 239 64.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.0e-82 311.6 258 62.8
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.6e-80 302.8 315 49.5
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 5.4e-52 209.5 155 63.2
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.3e-50 204.1 337 36.8
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.1e-48 197.6 151 61.6
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.0e-47 195.3 146 66.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 8.8e-47 192.2 172 57.6
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.2e-45 187.6 144 61.1
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.0e-39 168.7 126 69.8
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-39 167.9 219 44.3
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 5.7e-38 162.9 126 61.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-32 144.4 433 26.1
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-31 140.6 172 49.4
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-30 138.7 143 53.1
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-25 121.7 78 73.1
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-22 109.8 80 66.2
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.5e-22 109.4 68 72.1
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-21 108.2 67 74.6
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 7.8e-19 99.4 96 50.0
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-17 95.1 114 49.1
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-17 94.7 104 52.9
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.7e-16 90.1 142 37.3
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.4e-15 88.6 96 49.0
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 6.8e-15 86.3 60 68.3
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.1e-12 79.0 64 57.8
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.9e-12 78.2 61 63.9
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 6.0e-11 73.2 57 59.6
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 3.9e-10 70.5 106 37.7
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.6e-08 65.1 73 38.4
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 2.8e-08 64.3 59 54.2
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-07 62.0 59 57.6
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-07 60.8 56 58.9


User provided reference genes

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