Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 1.5e-189 666.0 338 100.0
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 9.8e-120 434.1 232 94.8
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 4.0e-105 385.6 226 88.5
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 2.0e-104 383.3 227 85.9
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 2.6e-104 382.9 226 85.0
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.7e-103 379.0 226 84.1
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 3.3e-99 365.9 224 82.6
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 4.3e-99 365.5 223 83.0
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 4.3e-99 365.5 250 76.0
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 3.6e-98 362.5 225 81.3
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 4.7e-98 362.1 225 82.2
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 5.2e-97 358.6 224 81.7
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 1.5e-96 357.1 226 80.5
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.3e-95 354.0 232 76.3
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.3e-95 354.0 224 79.5
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.7e-95 353.6 227 78.9
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 2.9e-95 352.8 223 81.6
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 3.8e-95 352.4 227 78.9
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 1.1e-94 350.9 233 77.3
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.4e-94 350.5 211 84.4
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 2.4e-94 349.7 224 79.0
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.2e-93 347.4 221 78.7
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.2e-93 347.4 227 78.9
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.1e-93 346.7 221 79.2
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 6.0e-93 345.1 240 77.1
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 7.8e-93 344.7 223 78.9
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 7.8e-93 344.7 225 77.3
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 1.7e-92 343.6 222 77.5
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 3.0e-92 342.8 226 76.1
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 5.1e-92 342.0 221 77.8
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.1e-92 342.0 224 78.1
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 5.1e-92 342.0 222 77.5
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 1.5e-91 340.5 223 76.7
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 1.9e-91 340.1 230 76.5
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 4.3e-91 339.0 224 77.7
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 5.6e-91 338.6 224 76.3
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 7.3e-91 338.2 224 77.2
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 2.8e-90 336.3 222 77.9
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 2.8e-90 336.3 224 77.2
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 2.8e-90 336.3 222 76.1
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 4.7e-90 335.5 276 65.2
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 6.2e-90 335.1 224 76.3
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 6.2e-90 335.1 221 76.5
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 1.4e-89 334.0 222 76.6
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.4e-89 334.0 224 77.7
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.4e-89 334.0 223 76.2
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 1.8e-89 333.6 225 76.9
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 3.1e-89 332.8 221 75.6
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 3.1e-89 332.8 221 75.6
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 4.0e-89 332.4 224 76.8
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 8.9e-89 331.3 221 75.1
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 3.4e-88 329.3 224 75.4
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 3.4e-88 329.3 222 74.8
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.8e-88 328.6 225 75.6
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 5.8e-88 328.6 223 75.8
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 5.8e-88 328.6 224 75.4
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 1.3e-87 327.4 225 73.8
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 1.7e-87 327.0 220 75.9
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 2.2e-87 326.6 224 75.0
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 2.9e-87 326.2 221 74.2
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 2.9e-87 326.2 221 74.2
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 2.9e-87 326.2 224 75.0
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 1.1e-86 324.3 228 72.8
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 1.1e-86 324.3 216 77.3
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 1.2e-85 320.9 224 73.7
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 1.6e-85 320.5 220 73.6
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 4.6e-85 318.9 226 74.8
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 7.8e-85 318.2 225 73.3
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 7.8e-85 318.2 227 74.0
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 1.0e-84 317.8 224 72.8
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 3.3e-83 312.8 260 66.5
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 1.3e-82 310.8 224 72.8
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 1.2e-80 304.3 224 69.6
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 4.5e-80 302.4 219 71.2
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 7.6e-80 301.6 224 71.4
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.7e-79 300.4 219 71.2
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 1.7e-79 300.4 238 64.3
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 2.9e-79 299.7 204 75.5
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.4e-78 297.4 225 66.7
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 2.4e-78 296.6 224 71.0
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 4.2e-78 295.8 197 75.1
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 2.3e-76 290.0 250 63.2
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.5e-75 287.3 215 69.8
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 5.6e-75 285.4 193 77.2
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 3.7e-74 282.7 207 73.4
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 4.8e-74 282.3 270 60.0
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 1.1e-73 281.2 229 66.8
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 2.4e-73 280.0 246 63.4
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 2.6e-72 276.6 231 64.5
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 7.6e-72 275.0 221 66.1
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 1.9e-70 270.4 224 63.8
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.5e-70 268.9 227 65.6
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 3.3e-67 259.6 211 65.9
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 5.6e-67 258.8 182 72.0
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 4.2e-62 242.7 212 64.2
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 5.5e-62 242.3 153 79.1
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.6e-61 240.7 160 75.6
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.5e-61 239.6 265 55.1
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 6.0e-61 238.8 154 76.0
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 7.9e-61 238.4 221 57.5
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 9.0e-57 224.9 209 64.1
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 1.7e-55 220.7 221 52.5
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 7.9e-53 211.8 231 51.5
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 3.7e-50 203.0 313 42.5
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 4.5e-48 196.1 143 66.4
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 1.1e-46 191.4 225 48.9
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.7e-44 182.2 205 54.6
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 1.5e-40 171.0 224 46.0
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 7.2e-38 162.2 150 54.7
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 8.0e-37 158.7 85 90.6
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 3.0e-36 156.8 105 74.3
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 2.4e-33 147.1 388 32.0
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.3e-26 124.8 87 65.5
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 7.7e-24 115.5 70 77.1
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 8.0e-21 105.5 67 77.6
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 5.2e-20 102.8 140 47.1
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 1.2e-19 101.7 51 94.1
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 3.7e-18 96.7 71 71.8
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 2.3e-15 87.4 66 72.7
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 1.5e-14 84.7 217 31.3
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 7.2e-14 82.4 82 63.4
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 4.4e-11 73.2 63 65.1
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 6.3e-10 69.3 102 42.2
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 5.4e-09 66.2 56 67.9
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.0e-07 62.0 44 75.0
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.1e-06 58.5 39 74.4
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.5e-06 58.2 53 56.6


User provided reference genes

Program Settings