Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.5e-231 803.9 397 100.0
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.5e-207 726.1 403 89.6
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.8e-198 695.3 399 86.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 4.9e-179 631.3 397 80.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 8.4e-179 630.6 397 79.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 5.4e-178 627.9 397 79.6
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.5e-167 592.4 408 75.2
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 4.3e-167 591.7 410 73.9
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.7e-163 579.7 395 73.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.4e-162 576.6 397 72.8
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 4.2e-162 575.1 399 73.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 2.7e-161 572.4 405 72.1
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 7.9e-161 570.9 413 71.9
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.8e-160 569.7 403 71.5
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.3e-160 569.3 406 71.4
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.0e-160 568.9 404 72.3
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.5e-159 565.8 417 69.8
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.3e-159 565.5 400 71.8
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 4.3e-159 565.1 394 72.8
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 4.3e-159 565.1 406 72.2
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 7.4e-159 564.3 328 82.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 6.2e-158 561.2 402 72.1
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 8.2e-158 560.8 398 71.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.8e-157 559.7 410 72.0
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.1e-157 558.9 394 71.6
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 6.9e-157 557.8 405 71.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 6.9e-157 557.8 405 69.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.4e-156 555.4 297 88.2
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.8e-156 554.7 408 68.6
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 6.5e-155 551.2 401 70.1
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.1e-154 550.4 417 66.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 2.5e-154 549.3 398 70.4
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 3.2e-154 548.9 331 80.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.1e-153 546.2 325 81.2
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.5e-153 545.4 314 82.2
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 4.6e-153 545.0 320 82.5
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 4.6e-153 545.0 410 67.6
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.0e-152 542.3 405 68.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.0e-152 542.3 393 70.0
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.9e-152 542.0 323 81.7
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.5e-151 540.0 399 72.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 9.7e-151 537.3 322 79.5
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 6.9e-149 531.2 321 78.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.9e-149 531.2 405 66.2
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 4.5e-148 528.5 296 84.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.3e-147 526.9 320 80.3
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.2e-147 526.2 408 65.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.2e-147 526.2 330 77.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.9e-147 525.8 402 68.2
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.8e-147 525.4 399 67.4
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.0e-147 525.0 398 67.3
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 8.5e-147 524.2 406 66.5
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 8.5e-147 524.2 321 78.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.4e-146 523.5 384 69.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 3.2e-146 522.3 296 83.4
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.2e-146 521.9 295 83.7
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-145 520.0 370 70.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.7e-145 519.2 398 67.6
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.8e-144 516.5 397 66.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.7e-144 514.6 404 66.3
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 8.8e-144 514.2 401 67.3
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.5e-143 512.7 367 69.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.3e-143 511.9 400 66.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-142 510.4 400 66.0
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.3e-142 510.4 367 70.0
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.2e-142 509.6 400 64.8
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-142 509.6 407 64.9
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.8e-142 509.2 391 66.0
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-142 509.2 391 66.0
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.4e-141 506.1 322 74.2
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 5.3e-141 505.0 272 86.4
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 9.1e-141 504.2 422 63.0
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-140 503.8 395 65.1
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.5e-140 503.4 310 78.7
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 7.7e-140 501.1 391 66.0
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-139 500.0 416 63.5
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 8.5e-139 497.7 407 63.4
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.1e-138 497.3 293 81.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.2e-137 493.8 329 71.1
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 5.1e-136 488.4 338 74.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.8e-134 481.9 349 67.9
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 4.8e-134 481.9 272 80.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.3e-131 473.8 257 87.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.3e-131 473.8 326 71.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.2e-131 473.0 378 64.6
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.2e-131 473.0 371 65.5
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.1e-129 466.5 395 62.5
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.3e-128 463.0 324 69.4
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.7e-126 455.7 353 66.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.7e-126 455.7 353 66.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.7e-126 455.7 353 66.6
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 4.8e-126 455.3 405 60.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.8e-126 455.3 352 70.5
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.8e-125 453.4 401 60.1
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 5.3e-125 451.8 294 70.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.0e-124 449.9 291 69.4
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.5e-124 448.7 400 61.2
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.9e-123 446.0 326 64.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.8e-123 445.7 293 72.0
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.5e-122 443.7 388 59.3
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.9e-122 443.4 414 59.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 6.1e-121 438.3 245 84.1
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 3.0e-120 436.0 242 83.9
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 5.2e-120 435.3 262 82.1
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.4e-119 432.6 296 70.9
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 5.7e-119 431.8 295 72.5
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 9.1e-117 424.5 340 61.5
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.6e-116 423.7 301 66.4
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.9e-116 421.8 236 83.9
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.7e-116 421.4 324 62.7
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.8e-115 419.1 411 58.2
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-114 417.5 301 65.8
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 7.5e-111 404.8 332 64.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.8e-111 404.4 324 61.7
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 3.7e-110 402.5 216 89.4
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-109 401.0 214 90.7
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.9e-107 392.9 328 62.5
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.4e-103 379.0 275 68.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-101 374.4 256 72.7
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.1e-101 374.4 273 71.1
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.0e-101 371.7 330 58.2
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.3e-98 362.8 303 64.0
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 4.3e-98 362.5 326 55.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 5.6e-98 362.1 268 63.1
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.3e-94 348.2 346 57.2
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 7.0e-93 345.1 220 75.9
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.3e-91 340.9 317 56.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.5e-90 336.7 324 53.1
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.2e-89 334.3 289 63.0
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.3e-86 321.6 358 51.4
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.2e-84 317.8 204 73.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.1e-81 307.0 330 53.9
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 4.7e-81 305.8 173 85.0
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 6.2e-81 305.4 330 54.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.2e-79 301.2 160 85.6
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.0e-75 286.6 159 86.8
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.9e-75 286.2 269 58.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.1e-74 284.6 158 82.3
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-74 284.6 392 47.2
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.5e-74 284.3 237 67.1
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.1e-72 278.1 215 63.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 4.2e-69 266.2 200 67.0
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.2e-68 264.6 281 50.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 4.6e-68 262.7 248 60.1
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.9e-66 257.3 174 69.5
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.3e-66 256.5 154 76.0
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.4e-64 251.1 282 46.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.8e-64 250.8 239 54.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-60 237.7 229 57.6
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.1e-59 232.6 148 72.3
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.6e-58 229.2 274 44.9
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 8.1e-57 225.3 137 75.9
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.1e-56 223.4 183 65.0
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.6e-55 220.3 147 70.7
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 7.6e-55 218.8 215 53.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.9e-53 214.2 182 57.1
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 6.0e-52 209.1 214 58.9
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.4e-50 202.2 194 58.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.8e-49 199.5 276 42.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-47 194.9 157 59.9
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.9e-46 190.3 174 54.6
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 4.5e-39 166.4 119 66.4
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 7.1e-37 159.1 147 56.5
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.6e-31 140.6 149 55.7
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.0e-30 138.7 81 76.5
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 5.1e-27 126.3 72 84.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 2.5e-26 124.0 121 48.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.7e-25 120.2 70 80.0
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 4.1e-24 116.7 180 42.2
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 4.2e-21 106.7 159 44.7
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.3e-19 100.9 165 39.4
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 5.1e-19 99.8 53 83.0
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-16 91.7 55 76.4
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.4e-16 91.7 88 56.8
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-14 85.1 56 73.2
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.7e-14 84.7 152 40.1
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.9e-13 81.3 41 95.1
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.2e-12 78.6 67 53.7
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.2e-12 78.6 45 77.8
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 8.0e-12 75.9 65 53.8
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-10 71.2 48 70.8
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 2.0e-10 71.2 53 60.4
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 3.7e-09 67.0 209 31.6
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.4e-08 65.1 251 27.9
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 3.1e-08 63.9 244 28.7
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.7e-07 59.3 41 73.2


User provided reference genes

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