Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 0.0e+00 1303.5 630 100.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 0.0e+00 1133.6 569 96.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 0.0e+00 1130.5 578 95.3
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.6e-309 1064.3 567 89.2
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.7e-309 1063.9 573 90.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 6.8e-308 1060.1 567 88.5
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.6e-307 1058.1 567 89.1
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.2e-306 1055.0 575 90.1
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 6.4e-306 1053.5 565 88.3
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 3.2e-305 1051.2 567 88.0
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.2e-305 1051.2 567 88.5
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 7.0e-305 1050.0 567 88.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 9.2e-305 1049.7 572 87.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.6e-304 1048.9 564 87.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.0e-304 1048.5 569 89.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.6e-303 1043.5 567 89.6
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.1e-302 1042.7 561 88.6
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.6e-302 1040.4 567 86.9
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 7.3e-302 1040.0 567 87.1
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 7.3e-302 1040.0 567 86.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.6e-301 1038.9 563 87.9
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 2.1e-301 1038.5 563 87.9
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 3.6e-301 1037.7 567 87.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.6e-301 1037.7 563 87.6
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 4.7e-301 1037.3 565 86.7
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 4.7e-301 1037.3 561 88.1
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 6.2e-301 1036.9 567 87.3
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 4.0e-300 1034.2 574 87.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 5.2e-300 1033.9 563 87.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.2e-300 1033.9 568 87.3
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.6e-299 1031.6 570 86.5
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 4.4e-299 1030.8 561 86.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.4e-299 1030.8 567 86.1
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 7.5e-299 1030.0 567 86.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-298 1029.2 563 86.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.2e-298 1028.5 567 86.9
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.7e-298 1027.7 565 86.9
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 6.4e-298 1026.9 567 86.1
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 6.4e-298 1026.9 567 86.1
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 6.4e-298 1026.9 567 85.7
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 8.3e-298 1026.5 567 86.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.4e-297 1025.8 568 84.9
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.9e-297 1025.4 567 86.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.4e-297 1025.0 563 86.5
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.2e-297 1024.6 563 86.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 4.1e-297 1024.2 567 86.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.1e-297 1024.2 563 86.5
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.1e-297 1024.2 566 85.5
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.1e-297 1024.2 567 86.9
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.0e-297 1023.5 561 87.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 7.0e-297 1023.5 550 88.2
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 9.2e-297 1023.1 567 86.2
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.1e-296 1021.9 567 85.7
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 6.0e-296 1020.4 567 85.0
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.0e-296 1020.4 567 86.1
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.8e-296 1020.0 567 86.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.3e-295 1018.5 567 86.2
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.3e-295 1018.5 567 85.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.1e-295 1017.3 565 85.3
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.5e-294 1015.0 567 85.4
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.3e-294 1014.6 563 86.3
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.3e-294 1014.2 567 85.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 7.3e-294 1013.4 567 85.4
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.2e-293 1012.7 563 85.6
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.2e-293 1012.7 563 85.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.6e-293 1012.3 567 85.5
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 8.9e-292 1006.5 575 84.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.4e-291 1004.2 570 88.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.7e-290 1002.3 565 83.4
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.4e-290 1000.3 561 84.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.1e-289 999.6 567 83.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.1e-289 999.6 552 85.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.9e-289 998.8 563 84.5
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 9.2e-289 996.5 561 84.1
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 9.2e-289 996.5 565 83.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.6e-288 995.7 565 82.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.3e-287 992.6 560 85.4
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.7e-287 992.3 556 85.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.0e-287 991.5 551 85.8
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.0e-287 991.5 564 84.8
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.8e-285 984.9 565 83.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.6e-285 984.6 568 82.4
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 4.7e-285 984.2 550 85.1
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 4.7e-285 984.2 565 84.1
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.4e-284 981.9 564 84.2
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.8e-284 980.3 549 84.7
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.4e-283 978.0 534 87.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.6e-283 976.9 549 84.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-281 973.0 567 83.1
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.2e-280 969.5 562 83.5
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.6e-280 969.1 564 80.9
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.5e-280 968.0 564 81.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.9e-279 964.5 564 82.4
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-278 963.0 590 79.0
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.3e-277 959.5 564 81.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.3e-277 959.5 562 82.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-277 959.1 569 79.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.4e-276 955.3 568 79.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.3e-276 954.1 564 81.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-275 953.0 564 81.2
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-275 953.0 564 81.2
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-275 953.0 564 81.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-275 952.6 564 81.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.6e-275 951.8 564 81.0
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.6e-275 951.8 564 80.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.4e-275 951.4 564 81.0
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 5.8e-275 950.7 564 81.0
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-275 950.7 564 80.7
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 5.8e-275 950.7 564 80.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 2.2e-274 948.7 564 80.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 8.4e-274 946.8 564 80.3
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.4e-274 946.8 564 80.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.1e-273 946.4 567 78.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.4e-273 946.0 564 80.9
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-273 946.0 567 78.5
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.4e-273 944.1 564 79.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-272 942.2 564 80.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-272 942.2 564 80.1
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 7.8e-272 940.3 564 79.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 3.0e-271 938.3 564 80.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 8.7e-271 936.8 564 79.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.6e-269 931.4 571 77.1
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 6.2e-269 930.6 570 77.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.6e-267 925.2 570 76.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 4.9e-266 921.0 570 77.2
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.5e-264 914.8 567 76.0
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.0e-260 901.4 611 72.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 5.1e-255 884.4 524 80.3
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.1e-255 884.4 567 74.1
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.7e-254 880.9 565 73.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-252 876.7 564 75.7
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-252 876.7 551 76.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 5.8e-251 870.9 565 73.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-249 866.7 568 73.6
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-249 866.3 568 74.1
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.2e-248 863.2 557 76.7
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.9e-241 839.3 566 71.4
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.9e-239 831.6 469 82.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 9.1e-236 820.5 564 69.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 7.0e-220 767.7 418 87.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.2e-209 731.9 567 65.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.7e-208 728.4 425 80.7
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.4e-204 716.8 569 63.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-186 657.1 373 81.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.5e-179 632.5 541 56.0
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.3e-169 599.4 329 83.6
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-167 594.3 417 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.7e-165 587.0 488 55.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.2e-164 582.4 523 52.2
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.0e-158 563.5 292 87.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.9e-148 530.4 418 58.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.9e-137 493.8 568 49.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.3e-135 485.7 567 48.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 6.1e-131 472.2 318 70.8
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.1e-127 459.5 468 55.1
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 8.6e-85 318.9 213 72.8
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-83 312.4 549 37.9
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 6.4e-80 302.8 496 35.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.9e-64 250.8 197 63.5
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-62 244.2 197 61.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 5.1e-61 240.0 166 68.7
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.6e-53 213.0 119 85.7
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.9e-48 197.6 133 73.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.1e-46 191.4 128 74.2
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.5e-44 185.3 132 65.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 7.3e-44 183.0 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-43 181.0 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.8e-43 180.3 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.3e-42 176.8 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.1e-39 169.1 324 32.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.3e-32 145.6 494 26.7
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.4e-31 141.4 87 72.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.7e-30 137.9 94 69.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 4.8e-27 127.1 213 38.5
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 6.9e-26 123.2 67 77.6
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 9.0e-26 122.9 76 69.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.1e-21 107.1 184 39.1
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 5.1e-21 107.1 166 43.4
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-16 92.4 103 46.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.8e-10 72.0 46 65.2
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.2e-06 59.3 175 27.4
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 3.6e-06 57.8 99 30.3


User provided reference genes

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