Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 7.9e-175 617.1 329 100.0
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 8.0e-135 484.2 339 78.2
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.9e-121 438.7 314 76.1
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.9e-121 438.7 314 76.1
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 8.6e-121 437.6 327 72.5
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.5e-120 436.0 314 74.5
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.3e-120 435.6 314 75.5
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 6.8e-118 427.9 311 74.9
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 2.1e-98 363.2 348 60.3
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 5.1e-97 358.6 319 63.6
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 2.5e-96 356.3 343 60.9
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 3.7e-95 352.4 332 62.0
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 1.4e-94 350.5 325 60.6
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.2e-93 347.4 344 59.9
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 2.0e-93 346.7 335 61.8
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.9e-92 342.8 347 59.1
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 2.9e-92 342.8 333 59.5
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 8.4e-92 341.3 318 61.9
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 4.2e-91 339.0 347 58.8
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 7.1e-91 338.2 321 61.1
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 7.1e-91 338.2 342 60.2
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 9.3e-91 337.8 338 59.5
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 1.2e-90 337.4 327 59.3
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 4.6e-90 335.5 336 57.7
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 6.0e-90 335.1 339 59.9
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 6.0e-90 335.1 344 59.3
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 7.9e-90 334.7 339 59.6
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 1.0e-89 334.3 335 59.4
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.3e-89 333.2 348 58.3
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 3.0e-89 332.8 337 59.1
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.1e-88 330.9 304 60.2
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 1.5e-88 330.5 344 56.1
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 4.3e-88 328.9 326 58.6
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 5.6e-88 328.6 325 59.4
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 9.6e-88 327.8 341 56.6
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.8e-87 326.2 340 58.8
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 8.2e-87 324.7 345 57.4
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 1.4e-86 323.9 337 58.8
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 4.0e-86 322.4 308 59.4
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 2.6e-85 319.7 318 59.4
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 2.6e-85 319.7 339 57.2
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 4.5e-85 318.9 327 57.5
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 5.8e-85 318.5 328 57.0
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 2.2e-84 316.6 314 60.2
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 2.2e-84 316.6 317 57.7
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 3.8e-84 315.8 319 56.4
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 4.9e-84 315.5 339 54.3
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 4.9e-84 315.5 336 54.8
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 1.1e-83 314.3 340 55.0
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 1.4e-83 313.9 329 57.8
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 1.9e-83 313.5 332 56.6
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.2e-83 312.8 318 58.2
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 4.2e-83 312.4 326 57.4
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 5.5e-83 312.0 337 55.2
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 9.3e-83 311.2 366 51.6
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 1.2e-82 310.8 346 55.2
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 1.6e-82 310.5 330 54.8
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 2.1e-82 310.1 332 55.7
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.7e-82 309.7 315 57.8
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 3.5e-82 309.3 336 53.6
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 3.5e-82 309.3 437 47.6
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 4.6e-82 308.9 312 56.1
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 7.9e-82 308.1 332 55.1
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 7.9e-82 308.1 332 55.1
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.0e-81 307.8 321 56.7
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 1.0e-81 307.8 334 56.3
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 1.3e-81 307.4 332 55.7
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.8e-81 307.0 338 53.6
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 3.3e-80 302.8 333 53.8
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 4.3e-80 302.4 333 53.5
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.3e-79 300.8 336 55.4
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 1.3e-79 300.8 336 52.1
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 1.6e-79 300.4 307 55.4
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.8e-79 299.7 349 52.1
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 3.7e-79 299.3 332 56.9
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 6.3e-79 298.5 340 52.9
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 4.1e-78 295.8 340 52.1
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 2.2e-76 290.0 334 51.2
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 3.8e-76 289.3 369 51.5
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 5.0e-76 288.9 325 51.7
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 1.0e-73 281.2 323 50.5
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 1.8e-73 280.4 331 51.4
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 2.3e-73 280.0 334 53.0
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 2.8e-71 273.1 339 49.0
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 1.8e-70 270.4 292 56.2
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 1.2e-69 267.7 339 48.7
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 1.5e-69 267.3 331 52.6
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 2.2e-68 263.5 332 50.3
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 1.4e-67 260.8 311 49.8
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.4e-65 254.2 260 60.0
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 2.4e-62 243.4 274 54.0
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 7.0e-62 241.9 377 42.7
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 2.2e-60 236.9 261 55.2
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 1.1e-56 224.6 435 39.5
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 1.2e-48 198.0 235 51.9
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 1.6e-45 187.6 186 57.0
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 1.1e-43 181.4 350 36.0
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 4.4e-40 169.5 363 31.7
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 8.3e-39 165.2 217 49.3
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 9.1e-38 161.8 288 43.4
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 2.6e-32 143.7 137 59.9
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 8.9e-25 118.6 221 38.5
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 2.6e-24 117.1 108 63.0
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 1.3e-23 114.8 469 26.9
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 3.7e-23 113.2 98 63.3
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 7.0e-22 109.0 123 53.7
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 2.7e-21 107.1 177 44.6
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 7.3e-19 99.0 84 63.1
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 6.2e-18 95.9 70 70.0
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 2.3e-17 94.0 73 65.8
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 6.8e-17 92.4 101 51.5
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 1.9e-14 84.3 254 29.5
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 4.1e-14 83.2 56 71.4
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 5.4e-14 82.8 238 26.9
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 7.8e-13 79.0 179 32.4
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 2.3e-12 77.4 61 65.6
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.5e-11 73.9 58 63.8
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 3.3e-11 73.6 40 77.5
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.2e-10 71.6 42 71.4
FvH4_4g35710 Fragaria vesca HOM05D006361 ORTHO05D007824 8.1e-10 68.9 66 60.6
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 3.4e-08 63.5 43 69.8


User provided reference genes

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