Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.8e-131 472.6 240 100.0
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 2.6e-106 389.0 238 83.2
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.4e-99 366.7 240 79.6
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 5.7e-98 361.3 240 78.3
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.2e-84 317.0 230 69.6
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.3e-78 297.0 231 63.2
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.5e-77 293.5 234 64.5
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 4.3e-77 292.0 235 61.3
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 7.3e-77 291.2 235 63.8
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.4e-75 287.0 227 67.0
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.1e-75 285.8 203 74.4
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.1e-75 285.8 203 74.4
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 4.0e-75 285.4 225 64.0
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 5.2e-75 285.0 235 61.7
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.2e-74 283.9 225 64.4
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 2.6e-74 282.7 228 65.4
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 5.8e-74 281.6 235 60.9
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 4.9e-73 278.5 212 66.5
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 5.4e-72 275.0 225 62.2
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 2.1e-71 273.1 225 62.7
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 4.6e-71 271.9 226 61.1
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 6.0e-71 271.6 234 60.7
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.0e-70 270.8 214 64.5
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.7e-70 270.0 225 66.2
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.0e-70 269.2 225 62.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.9e-70 268.9 229 64.2
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 5.1e-70 268.5 201 69.7
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.1e-69 267.3 230 60.4
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.5e-69 266.9 200 66.0
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.9e-69 266.5 239 55.2
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.9e-69 266.5 224 60.7
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.9e-69 266.5 226 60.2
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 4.3e-69 265.4 224 58.9
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.6e-69 265.0 227 62.1
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.2e-68 263.8 234 55.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 8.1e-68 261.2 226 60.2
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 2.3e-67 259.6 224 56.7
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 4.0e-67 258.8 224 58.5
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.8e-67 258.1 200 66.0
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 1.2e-66 257.3 224 58.5
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.2e-66 257.3 224 58.5
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.5e-66 256.9 226 58.8
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 2.0e-66 256.5 224 57.6
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.0e-66 256.5 226 57.5
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 4.4e-66 255.4 201 65.2
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 9.9e-66 254.2 224 57.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 6.4e-65 251.5 224 56.7
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 3.2e-64 249.2 230 58.3
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 3.2e-64 249.2 226 58.8
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 7.1e-64 248.1 224 57.1
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.1e-63 246.5 235 56.6
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.6e-60 236.9 173 66.5
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.4e-59 233.8 213 57.7
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.4e-59 233.8 223 57.0
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 2.0e-58 229.9 202 58.4
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 2.6e-58 229.6 203 59.6
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 3.8e-57 225.7 228 51.8
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 4.9e-57 225.3 226 51.3
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.4e-56 223.8 232 52.2
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.9e-56 223.4 231 52.4
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.2e-56 222.6 184 62.0
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.7e-55 219.5 154 73.4
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.3e-52 210.7 214 48.1
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.3e-49 200.7 155 64.5
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 6.4e-49 198.4 185 56.8
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.0e-46 191.0 200 51.5
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 9.0e-43 177.9 235 43.0
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.4e-42 176.0 163 53.4
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 5.8e-42 175.3 235 42.6
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 9.9e-42 174.5 130 66.2
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.9e-41 172.2 115 73.0
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 1.3e-38 164.1 171 54.4
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.1e-38 162.2 126 66.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.9e-37 160.2 116 69.8
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.3e-37 159.5 121 66.1
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.3e-37 159.5 121 66.1
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 2.1e-36 156.8 137 61.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 4.9e-33 145.6 115 68.7
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.9e-32 143.7 126 59.5
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.2e-32 142.5 111 63.1
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.2e-31 141.0 137 55.5
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.8e-30 137.1 102 68.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 3.0e-30 136.3 113 62.8
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 5.1e-30 135.6 108 64.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 8.7e-30 134.8 227 42.3
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.3e-28 131.0 137 52.6
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 1.6e-28 130.6 133 51.1
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.1e-27 127.9 119 57.1
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.4e-27 127.5 90 71.1
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 6.9e-27 125.2 116 50.0
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 3.8e-25 119.4 128 47.7
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 3.8e-25 119.4 72 76.4
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.7e-23 113.2 131 51.1
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.2e-20 103.6 93 54.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 6.3e-20 102.1 66 74.2
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.4e-19 100.9 223 26.9
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.8e-19 100.5 75 69.3
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 1.5e-18 97.4 77 57.1
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.9e-17 93.2 105 45.7
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.5e-16 90.1 93 47.3
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 7.2e-16 88.6 127 42.5
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 9.4e-16 88.2 176 29.5
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 6.9e-11 72.0 82 42.7
MD17G1182100 Malus domestica HOM05D007520 ORTHO05D009417 5.0e-09 65.9 53 66.0


User provided reference genes

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