Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 3.1e-231 804.7 383 100.0
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 6.6e-181 637.5 398 76.9
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 8.1e-163 577.4 399 72.7
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.3e-154 548.1 396 67.9
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.5e-153 546.6 396 67.9
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.5e-153 546.6 396 67.9
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.6e-153 544.3 396 67.9
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.0e-149 533.9 403 66.7
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 3.0e-141 505.8 385 63.6
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.5e-140 502.7 395 61.5
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.2e-137 493.8 387 64.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.7e-136 490.0 405 62.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 2.2e-136 489.6 376 63.0
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 2.3e-133 479.6 391 59.3
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 3.9e-133 478.8 397 59.4
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 5.1e-133 478.4 370 61.9
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 8.2e-131 471.1 395 57.5
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.1e-130 470.7 400 60.5
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.4e-130 470.3 385 57.9
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.5e-129 466.8 395 60.8
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 2.6e-129 466.1 400 58.5
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 1.7e-128 463.4 382 58.4
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.0e-128 461.8 400 60.2
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 6.5e-128 461.5 398 57.0
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 6.5e-128 461.5 383 62.7
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.9e-127 459.9 385 57.1
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 5.5e-127 458.4 393 59.8
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.2e-126 457.2 395 59.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.4e-125 453.8 386 55.7
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 1.8e-125 453.4 398 57.3
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 2.0e-124 449.9 372 61.6
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 7.4e-124 448.0 402 58.0
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 9.7e-124 447.6 380 59.2
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.3e-123 447.2 393 57.3
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 2.8e-123 446.0 397 57.4
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 4.8e-123 445.3 400 58.8
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 5.3e-122 441.8 386 57.0
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 5.3e-122 441.8 388 57.7
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 9.1e-122 441.0 384 55.5
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.2e-121 440.7 392 57.7
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.6e-121 440.3 395 58.2
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.0e-121 439.9 394 57.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.5e-121 438.7 387 57.6
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.7e-120 436.8 372 59.1
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 2.2e-120 436.4 392 57.7
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 8.5e-120 434.5 394 56.9
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 5.5e-119 431.8 381 57.5
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.7e-118 429.5 397 56.9
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.7e-118 429.5 400 55.2
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.7e-118 429.5 389 58.4
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 8.0e-118 427.9 392 57.4
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 8.0e-118 427.9 380 55.5
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 5.2e-117 425.2 388 53.9
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.5e-116 423.7 382 58.6
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.5e-116 423.7 393 53.9
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 2.6e-116 422.9 382 56.3
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 3.3e-116 422.5 378 56.6
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 3.3e-116 422.5 378 56.6
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 9.7e-116 421.0 388 54.6
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.3e-115 420.6 380 56.3
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 1.3e-115 420.6 391 56.3
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 3.7e-115 419.1 380 55.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 3.7e-115 419.1 412 52.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 3.7e-115 419.1 378 56.9
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 4.5e-113 412.1 327 62.7
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 8.5e-112 407.9 430 48.6
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 1.1e-111 407.5 333 61.0
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 2.5e-111 406.4 371 56.9
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.5e-111 406.4 406 53.7
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.6e-110 403.7 348 58.3
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.4e-109 400.6 365 56.2
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 5.2e-109 398.7 374 57.0
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 4.4e-108 395.6 389 52.2
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 5.4e-106 388.7 395 52.7
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 3.5e-105 386.0 406 51.2
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 3.5e-105 386.0 390 53.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.2e-102 377.5 393 50.6
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.3e-99 365.2 441 46.7
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 9.2e-98 361.3 391 49.4
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.0e-96 357.8 408 48.5
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.0e-93 347.8 369 50.7
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.8e-93 347.1 261 64.4
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.0e-93 346.3 373 49.1
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.8e-90 337.0 330 53.9
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 2.1e-86 323.6 229 65.9
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 8.0e-86 321.6 315 52.1
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 4.4e-84 315.8 324 51.9
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 4.1e-82 309.3 376 45.5
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 9.2e-82 308.1 414 44.2
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.9e-79 300.4 334 46.7
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 3.3e-79 299.7 396 43.7
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.1e-77 294.7 365 44.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 1.3e-75 287.7 462 38.1
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 4.9e-75 285.8 296 48.6
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 9.5e-71 271.6 278 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.3e-67 261.2 322 47.8
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 1.4e-61 241.1 303 43.2
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.5e-60 237.7 230 49.6
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.7e-59 234.2 280 46.8
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 5.4e-58 229.2 232 47.8
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.3e-55 219.5 143 69.9
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 3.6e-54 216.5 128 75.0
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.7e-51 207.6 270 43.7
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.4e-50 203.8 234 47.4
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 3.5e-49 199.9 124 73.4
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 5.1e-48 196.1 113 81.4
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.9e-47 194.1 293 43.0
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 4.0e-45 186.4 286 37.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.9e-43 179.5 142 58.5
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.1e-38 164.1 93 79.6
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 5.8e-36 156.0 122 55.7
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.5e-34 150.6 90 80.0
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 4.2e-34 149.8 112 61.6
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 9.3e-34 148.7 84 71.4
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.4e-29 134.8 138 54.3
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 3.1e-29 133.7 214 36.9
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.6e-22 111.3 87 57.5
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.4e-21 107.5 68 69.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 8.5e-19 99.0 106 50.0
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.0e-16 92.0 91 56.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 3.0e-16 90.5 50 76.0
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.1e-16 89.7 83 49.4
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 5.7e-15 86.3 223 30.0
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 5.9e-12 76.3 84 45.2
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 5.9e-12 76.3 84 45.2
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.1e-10 72.0 165 29.1
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.1e-10 72.0 165 29.1
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 9.4e-10 68.9 79 53.2
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 1.3e-06 58.5 41 53.7
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 8.2e-06 55.8 124 29.0


User provided reference genes

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