Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G330100 Prunus persica HOM05D006947 ORTHO05D008818 0.0e+00 1168.7 607 100.0
MD16G1022800 Malus domestica HOM05D006947 ORTHO05D008818 2.0e-256 889.0 585 81.0
FAN07G0937 Fragaria x ananassa HOM05D006947 ORTHO05D008818 1.1e-235 820.1 581 74.9
RcHm_v2.0_Chr4g0443581 Rosa chinensis HOM05D006947 ORTHO05D008818 1.4e-233 813.1 585 74.9
FAN12G3265 Fragaria x ananassa HOM05D006947 ORTHO05D008818 1.2e-229 800.0 614 70.7
Cfa014981 Carpinus fangiana HOM05D006947 ORTHO05D008818 1.0e-215 753.8 563 71.2
Dinv28045 Davidia involucrata HOM05D006947 ORTHO05D008818 6.5e-215 751.1 568 71.3
Haze_10941 Corylus avellana HOM05D006947 ORTHO05D008818 1.1e-214 750.4 619 66.2
CiPaw.06G048400 Carya illinoinensis HOM05D006947 ORTHO05D008818 2.3e-212 742.7 589 68.3
TAR622G0063 Trochodendron aralioides HOM05D006947 ORTHO05D008818 7.0e-209 731.1 564 70.2
Thecc.02G287500 Theobroma cacao HOM05D006947 ORTHO05D008818 1.2e-208 730.3 572 68.9
CSS0036590 Camellia sinensis var. sinensis HOM05D006947 ORTHO05D008818 7.0e-201 704.5 557 68.2
Potri.010G110200 Populus trichocarpa HOM05D006947 ORTHO05D008818 1.6e-200 703.4 557 67.9
Ciclev10014242m.g Citrus clementina HOM05D006947 ORTHO05D008818 2.0e-200 703.0 558 67.0
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 5.0e-199 698.4 582 66.3
Eucgr.B02936 Eucalyptus grandis HOM05D006947 ORTHO05D008818 1.5e-198 696.8 546 67.9
Gorai.002G176700 Gossypium raimondii HOM05D006947 ORTHO05D008818 5.5e-198 694.9 538 68.2
ClCG01G006350 Citrullus lanatus HOM05D006947 ORTHO05D008818 2.7e-197 692.6 573 66.1
GSVIVG01011706001 Vitis vinifera HOM05D006947 ORTHO05D008818 8.0e-197 691.0 487 73.3
TWI74G1199 Tripterygium wilfordii HOM05D006947 ORTHO05D008818 8.8e-196 687.6 558 66.5
Potri.008G131900 Populus trichocarpa HOM05D006947 ORTHO05D008818 2.6e-195 686.0 569 65.6
MELO3C005295.2 Cucumis melo HOM05D006947 ORTHO05D008818 2.2e-194 682.9 517 69.1
FvH4_4g34070 Fragaria vesca HOM05D006947 ORTHO05D008818 8.3e-194 681.0 438 79.9
Sed0026926 Sechium edule HOM05D006947 ORTHO05D008818 2.4e-193 679.5 536 66.2
Manes.17G080500 Manihot esculenta HOM05D006947 ORTHO05D008818 5.4e-193 678.3 584 63.0
Duzib251G0407 Durio zibethinus HOM05D006947 ORTHO05D008818 1.6e-192 676.8 566 65.4
Lalb_Chr10g0096001 Lupinus albus HOM05D006947 ORTHO05D008818 3.5e-192 675.6 540 67.2
QL03p033900 Quercus lobata HOM05D006947 ORTHO05D008818 8.6e-191 671.0 575 64.9
Hma1.2p1_0330F.1_g127400 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 3.6e-189 665.6 492 71.5
Hma1.2p1_0330F.1_g127410 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 1.8e-188 663.3 466 74.0
Glyma.09G120400 Glycine max HOM05D006947 ORTHO05D008818 3.0e-188 662.5 548 64.2
CsaV3_5G028330 Cucumis sativus L. HOM05D006947 ORTHO05D008818 4.0e-188 662.1 553 65.1
PGR102G1367 Punica granatum HOM05D006947 ORTHO05D008818 4.4e-187 658.7 502 69.5
Sabra10G0080600 Salix brachista HOM05D006947 ORTHO05D008818 3.7e-186 655.6 474 71.5
Gohir.D01G143300 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.6e-184 650.2 456 72.4
Gohir.A01G150136 Gossypium hirsutum HOM05D006947 ORTHO05D008818 2.9e-183 646.0 539 65.7
Nitab4.5_0000282g0010 Nicotiana tabacum HOM05D006947 ORTHO05D008818 7.3e-182 641.3 489 68.5
Atru.chr11.650 Acer truncatum HOM05D006947 ORTHO05D008818 6.1e-181 638.3 581 61.4
Cc11_g08260 Coffea canephora HOM05D006947 ORTHO05D008818 3.1e-180 636.0 562 61.0
Peaxi162Scf00376g00128 Petunia axillaris HOM05D006947 ORTHO05D008818 4.0e-180 635.6 522 65.3
Sc14g0006260 Simmondsia chinensis HOM05D006947 ORTHO05D008818 2.0e-179 633.3 557 61.0
Sc14g0007020 Simmondsia chinensis HOM05D006947 ORTHO05D008818 2.6e-179 632.9 557 61.0
Nitab4.5_0000018g0180 Nicotiana tabacum HOM05D006947 ORTHO05D008818 4.4e-179 632.1 503 67.0
HanXRQChr12g0363561 Helianthus annuus HOM05D006947 ORTHO05D008818 4.9e-178 628.6 557 62.3
DCAR_026786 Daucus carota HOM05D006947 ORTHO05D008818 6.4e-178 628.2 464 70.7
CARHR023620 Cardamine hirsuta HOM05D006947 ORTHO05D008818 8.3e-178 627.9 579 61.7
Phvul.003G022200 Phaseolus vulgaris HOM05D006947 ORTHO05D008818 8.3e-178 627.9 561 60.1
Carub.0001s2275 Capsella rubella HOM05D006947 ORTHO05D008818 3.2e-177 625.9 571 61.1
Glyma.07G166300 Glycine max HOM05D006947 ORTHO05D008818 9.2e-177 624.4 546 61.0
THA.LOC104822169 Tarenaya hassleriana HOM05D006947 ORTHO05D008818 1.6e-176 623.6 566 61.1
AL1G36850 Arabidopsis lyrata HOM05D006947 ORTHO05D008818 3.5e-176 622.5 554 61.9
Thhalv10006791m.g Eutrema salsugineum HOM05D006947 ORTHO05D008818 3.5e-176 622.5 549 61.9
CANSAT01G1138 Cannabis sativa HOM05D006947 ORTHO05D008818 3.9e-175 619.0 554 61.0
Gohir.1Z015600 Gossypium hirsutum HOM05D006947 ORTHO05D008818 5.0e-175 618.6 538 63.9
Sp1g20640 Schrenkiella parvula HOM05D006947 ORTHO05D008818 1.1e-174 617.5 557 61.4
AT1G23180 Arabidopsis thaliana HOM05D006947 ORTHO05D008818 8.0e-173 611.3 570 60.4
EL10Ac6g14173 Beta vulgaris HOM05D006947 ORTHO05D008818 8.9e-172 607.8 558 59.1
VMungo1215G1110 Vigna mungo HOM05D006947 ORTHO05D008818 1.2e-171 607.4 516 61.4
MBI15_g36991_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 2.6e-171 606.3 490 64.3
Aa31LG7G7190 Aethionema arabicum HOM05D006947 ORTHO05D008818 4.4e-171 605.5 542 60.5
BcaB03g11927 Brassica carinata HOM05D006947 ORTHO05D008818 4.4e-171 605.5 557 60.9
C08p21780 Brassica napus HOM05D006947 ORTHO05D008818 4.4e-171 605.5 557 60.9
BcaC07g39188 Brassica carinata HOM05D006947 ORTHO05D008818 1.7e-170 603.6 556 61.2
BolC8t49817H Brassica oleracea HOM05D006947 ORTHO05D008818 1.7e-170 603.6 556 61.2
Lsat_1_v5_gn_8_44260 Lactuca sativa HOM05D006947 ORTHO05D008818 1.7e-170 603.6 540 61.7
Ca_12591_v3 Cicer arietinum L. HOM05D006947 ORTHO05D008818 4.9e-170 602.1 551 59.7
MSTRG.907 Avicennia marina HOM05D006947 ORTHO05D008818 6.4e-170 601.7 542 61.1
BraA08t34762Z Brassica rapa HOM05D006947 ORTHO05D008818 3.2e-169 599.4 554 60.1
A08p28310 Brassica napus HOM05D006947 ORTHO05D008818 7.0e-169 598.2 552 59.2
AUR62014176 Chenopodium quinoa HOM05D006947 ORTHO05D008818 3.5e-168 595.9 551 57.5
Ah.03g137350 Amaranthus hybridus HOM05D006947 ORTHO05D008818 6.0e-168 595.1 509 61.9
Sopen05g023090 Solanum pennellii HOM05D006947 ORTHO05D008818 6.0e-168 595.1 532 60.0
Medtr1g031750 Medicago truncatula HOM05D006947 ORTHO05D008818 6.6e-167 591.7 484 64.5
Psat6g044440 Pisum sativum HOM05D006947 ORTHO05D008818 6.6e-167 591.7 571 58.0
AUR62039529 Chenopodium quinoa HOM05D006947 ORTHO05D008818 9.5e-166 587.8 537 58.7
Solyc05g026560.3 Solanum lycopersicum HOM05D006947 ORTHO05D008818 9.5e-166 587.8 532 59.8
arahy.Tifrunner.gnm1.ann1.8B134P Arachis hypogaea HOM05D006947 ORTHO05D008818 1.2e-163 580.9 573 57.6
arahy.Tifrunner.gnm1.ann1.573L1D Arachis hypogaea HOM05D006947 ORTHO05D008818 1.5e-163 580.5 470 65.5
Lj6A742T64 Lonicera japonica HOM05D006947 ORTHO05D008818 3.7e-162 575.9 516 60.5
ECA233G0254 Erigeron canadensis HOM05D006947 ORTHO05D008818 6.4e-162 575.1 447 68.2
Migut.L00588 Erythranthe guttata HOM05D006947 ORTHO05D008818 6.0e-160 568.5 516 60.3
MBI15_g41220_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 1.7e-159 567.0 426 67.8
PSO782G4825 Papaver somniferum HOM05D006947 ORTHO05D008818 8.6e-159 564.7 500 60.8
PSO063G5930 Papaver somniferum HOM05D006947 ORTHO05D008818 9.5e-158 561.2 500 61.0
Hund24964 Selenicereus undatus HOM05D006947 ORTHO05D008818 1.4e-156 557.4 566 56.0
Rhsim09G0093800 Rhododendron simsii HOM05D006947 ORTHO05D008818 1.8e-156 557.0 595 55.1
TPR.G36974 Trifolium pratense HOM05D006947 ORTHO05D008818 2.4e-156 556.6 551 57.2
unitig_52.g17412 Utricularia gibba HOM05D006947 ORTHO05D008818 2.0e-155 553.5 502 58.6
Actinidia36648 Actinidia chinensis HOM05D006947 ORTHO05D008818 3.9e-151 539.3 535 58.1
ATR0317G087 Amborella trichopoda HOM05D006947 ORTHO05D008818 2.5e-150 536.6 481 59.5
Aqoxy3G04093 Aquilegia oxysepala HOM05D006947 ORTHO05D008818 1.7e-146 523.9 524 55.7
HPP92_024592 Vanilla planifolia HOM05D006947 ORTHO05D008818 8.1e-141 505.0 515 54.2
CDE11G0632 Ceratophyllum demersum HOM05D006947 ORTHO05D008818 8.4e-138 495.0 512 53.5
Os01g0524700 Oryza sativa ssp. japonica HOM05D006947 ORTHO05D008818 2.3e-135 486.9 484 52.3
vmacro10663 Vaccinium macrocarpon HOM05D006947 ORTHO05D008818 3.9e-135 486.1 547 54.1
HPP92_024520 Vanilla planifolia HOM05D006947 ORTHO05D008818 1.5e-115 421.0 513 48.1
SalBow8G5231 Salvia bowleyana HOM05D006947 ORTHO05D008818 2.2e-101 374.0 322 62.4
MD13G1021800 Malus domestica HOM05D006947 ORTHO05D008818 2.8e-101 373.6 277 75.1
Lj2g0020590 Lotus japonicus HOM05D006947 ORTHO05D008818 5.3e-100 369.4 270 70.4
AagrBONN_evm.TU.Sc2ySwM_117.3643 Anthoceros agrestis HOM05D006947 ORTHO05D008818 3.5e-91 340.1 398 47.0
Nn4g24252 Nelumbo nucifera HOM05D006947 ORTHO05D008818 1.2e-86 325.1 250 68.4
Cpa.g.sc1084.1 Carica papaya HOM05D006947 ORTHO05D008818 3.1e-84 317.0 275 62.2
Pp3c18_19500 Physcomitrium patens HOM05D006947 ORTHO05D008818 2.7e-83 313.9 395 43.5
Nitab4.5_0000532g0040 Nicotiana tabacum HOM05D006947 ORTHO05D008818 4.5e-83 313.2 250 66.0
Migut.O00818 Erythranthe guttata HOM05D006947 ORTHO05D008818 1.5e-78 298.1 269 61.7
Cpa.g.sc2.239 Carica papaya HOM05D006947 ORTHO05D008818 2.5e-73 280.8 286 55.2
Nitab4.5_0000532g0050 Nicotiana tabacum HOM05D006947 ORTHO05D008818 2.0e-70 271.2 251 59.0
SalBow8G4359 Salvia bowleyana HOM05D006947 ORTHO05D008818 4.6e-67 260.0 267 54.3
Oeu023430.2 Olea europaea HOM05D006947 ORTHO05D008818 1.9e-60 238.0 176 67.6
Mapoly0112s0009 Marchantia polymorpha HOM05D006947 ORTHO05D008818 4.9e-45 186.8 305 36.4
CBR_g50426 Chara braunii HOM05D006947 ORTHO05D008818 8.4e-45 186.0 428 32.5
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 8.1e-24 116.3 145 49.7
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.9e-17 95.1 110 52.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 9.6e-17 92.8 95 57.9
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-13 82.8 130 42.3
Oeu039872.1 Olea europaea HOM05D000215 ORTHO05D002239 2.5e-09 68.2 190 31.1
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 4.3e-09 67.4 49 69.4
Nitab4.5_0009597g0040 Nicotiana tabacum HOM05D000215 ORTHO05D002239 2.1e-08 65.1 190 30.0
Oeu059233.1 Olea europaea HOM05D001356 ORTHO05D003895 1.1e-07 62.8 224 25.0
Lsat_1_v5_gn_4_154640 Lactuca sativa HOM05D001865 ORTHO05D001815 1.4e-07 62.4 188 28.2
ECA238G0597 Erigeron canadensis HOM05D000577 ORTHO05D003509 3.1e-07 61.2 222 25.2
Hma1.2p1_0789F.1_g218320 Hydrangea macrophylla HOM05D000577 ORTHO05D003509 4.1e-07 60.8 225 28.9
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 5.3e-07 60.5 181 28.7
Migut.H01405 Erythranthe guttata HOM05D000215 ORTHO05D002239 6.9e-07 60.1 205 27.8
CBR_g36592 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-07 59.7 146 29.5
CARHR194740 Cardamine hirsuta HOM05D000215 ORTHO05D002282 1.2e-06 59.3 135 31.1
HPP92_012788 Vanilla planifolia HOM05D000577 ORTHO05D003389 1.2e-06 59.3 239 24.7
CSS0025311 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 2.6e-06 58.2 266 25.9
CSS0028963 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 2.6e-06 58.2 266 25.9
Gohir.A13G102700 Gossypium hirsutum HOM05D000215 ORTHO05D002282 2.6e-06 58.2 175 28.6
MBI15_g33086_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D003895 3.4e-06 57.8 205 26.3
Lsat_1_v5_gn_3_81460 Lactuca sativa HOM05D001865 ORTHO05D001815 4.5e-06 57.4 174 28.7
CAN.G568.6 Capsicum annuum HOM05D000577 ORTHO05D003509 5.9e-06 57.0 215 26.0
AUR62030985 Chenopodium quinoa HOM05D000215 ORTHO05D003454 5.9e-06 57.0 146 29.5
Gorai.013G118700 Gossypium raimondii HOM05D000215 ORTHO05D002282 5.9e-06 57.0 175 28.6
DCAR_025873 Daucus carota HOM05D001865 ORTHO05D001815 7.6e-06 56.6 175 30.9
CSS0016071 Camellia sinensis var. sinensis HOM05D000577 ORTHO05D003389 1.0e-05 56.2 233 26.6
Gohir.D13G105900 Gossypium hirsutum HOM05D000215 ORTHO05D002282 1.0e-05 56.2 175 28.6


User provided reference genes

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