Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G326300 Prunus persica HOM05D006661 ORTHO05D008369 9.5e-52 206.5 97 100.0
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 4.8e-11 71.2 47 72.3
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 4.8e-11 71.2 47 72.3
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 4.8e-11 71.2 47 72.3
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 6.3e-11 70.9 47 70.2
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 6.3e-11 70.9 47 70.2
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 1.4e-10 69.7 47 70.2
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 2.4e-10 68.9 47 70.2
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 7.6e-09 63.9 35 88.6
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 1.0e-08 63.5 41 70.7
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 1.0e-08 63.5 42 73.8
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 1.7e-08 62.8 35 88.6
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 2.2e-08 62.4 42 73.8
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 2.2e-08 62.4 42 73.8
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 2.2e-08 62.4 42 71.4
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 2.9e-08 62.0 35 85.7
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 2.9e-08 62.0 42 71.4
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 2.9e-08 62.0 42 71.4
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 2.9e-08 62.0 42 71.4
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 2.9e-08 62.0 42 71.4
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 2.9e-08 62.0 42 71.4
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 3.8e-08 61.6 35 85.7
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 6.5e-08 60.8 35 85.7
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 6.5e-08 60.8 35 82.9
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 6.5e-08 60.8 35 82.9
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 6.5e-08 60.8 35 82.9
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 6.5e-08 60.8 42 71.4
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 1.1e-07 60.1 35 82.9
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 1.1e-07 60.1 35 82.9
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.4e-07 59.7 35 82.9
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 1.4e-07 59.7 35 82.9
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.4e-07 59.7 35 80.0
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.4e-07 59.7 35 80.0
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 1.9e-07 59.3 33 84.8
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 1.9e-07 59.3 33 84.8
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 1.9e-07 59.3 42 71.4
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 1.9e-07 59.3 35 80.0
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 2.5e-07 58.9 35 80.0
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 2.5e-07 58.9 35 80.0
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 2.5e-07 58.9 34 82.4
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 2.5e-07 58.9 42 71.4
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 3.2e-07 58.5 42 69.0
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 3.2e-07 58.5 40 70.0
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 3.2e-07 58.5 42 66.7
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 3.2e-07 58.5 34 82.4
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 4.2e-07 58.2 35 80.0
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 4.2e-07 58.2 34 76.5
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 4.2e-07 58.2 35 82.9
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 4.2e-07 58.2 34 79.4
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 5.5e-07 57.8 35 77.1
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 5.5e-07 57.8 35 80.0
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 5.5e-07 57.8 35 80.0
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 5.5e-07 57.8 35 80.0
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 7.2e-07 57.4 35 77.1
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 7.2e-07 57.4 35 80.0
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 7.2e-07 57.4 39 59.0
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 7.2e-07 57.4 42 66.7
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 7.2e-07 57.4 35 80.0
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 9.3e-07 57.0 35 77.1
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 9.3e-07 57.0 35 77.1
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 9.3e-07 57.0 35 80.0
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 9.3e-07 57.0 42 64.3
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 9.3e-07 57.0 35 77.1
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 9.3e-07 57.0 35 77.1
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 1.2e-06 56.6 35 77.1
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 1.2e-06 56.6 35 77.1
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 1.2e-06 56.6 35 80.0
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 2.7e-06 55.5 33 78.8
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 2.7e-06 55.5 33 78.8
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 2.7e-06 55.5 35 77.1
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 3.6e-06 55.1 42 64.3
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 4.6e-06 54.7 35 77.1


User provided reference genes

Program Settings