Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.9e-237 825.5 420 100.0
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 2.1e-212 742.3 421 90.3
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 4.2e-197 691.4 420 81.9
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 9.4e-197 690.3 420 81.7
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.7e-196 688.7 420 81.7
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 9.1e-192 673.7 420 80.5
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.2e-191 673.3 419 82.3
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 5.9e-191 671.0 418 78.9
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.3e-190 669.8 418 78.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.3e-190 669.8 425 79.1
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 2.2e-190 669.1 440 77.7
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 1.2e-188 663.3 417 80.6
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 6.8e-187 657.5 418 79.7
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.6e-186 655.6 463 73.7
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 5.7e-186 654.4 415 79.0
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 2.7e-183 645.6 408 79.9
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.9e-182 642.1 418 75.8
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 3.8e-182 641.7 407 79.1
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 8.6e-182 640.6 415 76.4
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 8.6e-182 640.6 408 77.7
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 1.1e-181 640.2 414 78.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 2.5e-181 639.0 415 76.9
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 1.2e-180 636.7 414 75.8
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 1.2e-180 636.7 410 77.3
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 3.6e-180 635.2 418 75.4
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 8.0e-180 634.0 419 77.1
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 8.0e-180 634.0 415 75.9
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.4e-179 633.3 410 77.6
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 8.9e-179 630.6 420 74.5
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 2.6e-178 629.0 414 73.2
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.7e-177 626.3 418 73.0
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 4.1e-176 621.7 416 72.1
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.0e-176 620.9 446 73.3
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.2e-175 620.2 415 72.5
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 2.0e-175 619.4 415 72.0
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.7e-175 619.0 415 72.3
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 2.3e-174 615.9 418 73.2
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 3.0e-174 615.5 409 74.6
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 6.6e-174 614.4 414 73.9
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.5e-173 613.2 422 70.9
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.5e-173 613.2 416 71.2
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 2.5e-173 612.5 410 73.9
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 7.3e-173 610.9 416 74.3
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 9.5e-173 610.5 416 71.2
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 1.2e-172 610.1 416 70.7
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.8e-172 609.0 418 71.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 8.0e-172 607.4 426 69.5
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.0e-171 607.1 414 72.7
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.4e-171 606.7 416 70.4
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.8e-171 606.3 416 70.9
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 5.2e-171 604.7 409 74.3
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 6.8e-171 604.4 413 71.9
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.5e-170 603.2 418 73.4
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 2.0e-170 602.8 424 70.3
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 9.8e-170 600.5 405 74.1
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.7e-169 599.7 413 72.4
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 4.9e-169 598.2 414 71.3
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.4e-168 596.7 462 66.5
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 2.4e-168 595.9 416 70.0
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 4.1e-168 595.1 418 71.1
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 4.1e-168 595.1 445 66.5
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 4.1e-168 595.1 413 72.2
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 5.4e-168 594.7 418 70.8
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 9.2e-168 594.0 418 72.2
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.6e-167 593.2 408 71.8
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 2.0e-167 592.8 445 66.3
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 2.0e-167 592.8 418 72.2
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 3.5e-167 592.0 416 71.9
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.6e-167 591.7 443 70.9
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 1.7e-166 589.7 445 65.8
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 2.1e-164 582.8 417 68.1
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 3.1e-163 578.9 413 70.2
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 1.5e-162 576.6 455 65.5
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 9.9e-162 573.9 416 67.5
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 2.2e-161 572.8 461 64.4
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 1.7e-158 563.1 409 69.2
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.8e-155 553.1 333 83.5
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 5.2e-155 551.6 382 73.3
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.0e-154 549.7 443 63.7
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.7e-153 546.6 422 64.5
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 3.0e-150 535.8 412 63.1
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.1e-149 533.9 415 67.0
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.1e-149 533.9 408 67.4
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.3e-149 531.9 446 61.9
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 9.6e-149 530.8 487 57.7
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-148 530.4 408 66.9
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 3.6e-148 528.9 418 65.3
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 4.7e-148 528.5 346 77.5
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 9.0e-147 524.2 463 57.2
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 4.4e-146 521.9 408 65.9
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 1.7e-145 520.0 414 65.7
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 5.1e-142 508.4 360 71.1
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.1e-142 508.4 413 60.5
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.3e-140 503.8 308 84.4
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 2.4e-139 499.6 424 60.4
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 2.4e-139 499.6 332 73.5
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.8e-123 446.8 411 57.4
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 3.1e-123 446.0 323 73.4
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.8e-121 439.1 285 75.4
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 3.5e-119 432.6 421 57.5
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.5e-106 390.6 264 73.1
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 3.4e-106 389.4 283 67.8
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 1.7e-100 370.5 421 47.5
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 3.1e-99 366.3 409 50.4
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.8e-97 359.4 215 83.7
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 5.0e-97 359.0 386 49.2
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.2e-96 356.3 239 74.9
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.3e-94 350.1 215 79.5
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.5e-93 347.4 263 66.2
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 2.2e-89 333.6 242 66.9
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 3.8e-89 332.8 317 56.2
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 4.8e-84 315.8 412 44.9
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.8e-84 315.8 361 51.5
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 6.3e-84 315.5 310 53.5
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 4.7e-79 299.3 366 47.0
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 9.1e-75 285.0 169 87.6
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 8.3e-68 261.9 225 60.9
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 3.6e-63 246.5 155 83.2
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 2.3e-62 243.8 143 82.5
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 7.5e-61 238.8 427 37.5
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.6e-58 231.1 137 81.8
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.7e-52 211.1 179 58.1
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.5e-48 198.0 125 77.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 1.9e-48 197.6 405 34.3
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.8e-38 164.5 306 35.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.2e-34 151.8 106 73.6
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.2e-34 151.8 101 69.3
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.1e-32 145.2 157 51.0
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 2.6e-29 134.0 87 75.9
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 9.9e-29 132.1 94 70.2
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.4e-22 111.7 360 28.3
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.2e-19 100.5 95 51.6
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 7.1e-19 99.4 207 32.4
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.6e-18 98.2 73 65.8
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.5e-18 97.1 116 52.6
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.8e-15 87.4 79 54.4
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 1.8e-14 84.7 56 76.8


User provided reference genes

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