Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 6.9e-229 797.0 403 100.0
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 4.3e-199 698.0 409 86.6
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.0e-195 686.8 401 85.0
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 3.0e-192 675.2 385 86.8
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 7.7e-180 634.0 377 81.7
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 7.7e-180 634.0 377 81.7
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 3.8e-179 631.7 378 81.0
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 4.4e-175 618.2 377 79.8
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.8e-174 615.5 382 79.3
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 6.3e-174 614.4 376 79.8
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 6.3e-174 614.4 376 81.1
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.8e-173 612.8 376 80.1
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 2.4e-173 612.5 377 78.8
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 4.1e-173 611.7 376 80.3
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 5.3e-173 611.3 388 77.3
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.0e-172 609.4 376 79.5
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 3.5e-172 608.6 377 78.8
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 3.5e-172 608.6 377 78.8
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 4.5e-172 608.2 376 78.5
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.3e-171 606.7 378 78.3
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.7e-171 606.3 375 80.8
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 2.2e-171 605.9 380 79.2
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.5e-170 603.2 379 78.4
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.5e-170 602.4 376 77.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 4.2e-170 601.7 385 76.1
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 9.4e-170 600.5 377 76.1
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 3.6e-169 598.6 392 75.0
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 8.0e-169 597.4 376 77.7
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.0e-168 597.0 376 77.9
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.8e-168 596.3 378 78.6
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.8e-168 596.3 377 77.2
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.8e-168 596.3 394 74.4
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.3e-168 595.9 380 76.1
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 3.0e-168 595.5 377 76.9
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 3.0e-168 595.5 376 76.3
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.5e-167 593.2 378 76.5
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.5e-167 593.2 380 75.5
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.5e-167 593.2 392 75.5
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 4.4e-167 591.7 401 73.3
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 5.7e-167 591.3 380 75.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 5.7e-167 591.3 375 77.1
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 5.7e-167 591.3 375 76.5
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.3e-166 590.1 375 76.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 2.8e-166 589.0 381 75.3
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.7e-166 588.6 377 75.1
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.7e-166 588.6 378 75.4
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.1e-165 587.0 377 75.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 5.4e-165 584.7 376 75.5
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 5.4e-165 584.7 376 76.1
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 9.1e-165 583.9 376 75.8
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 9.1e-165 583.9 398 73.6
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.2e-164 583.6 384 73.7
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.5e-164 582.0 378 75.7
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 7.7e-164 580.9 378 74.6
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 7.7e-164 580.9 378 74.6
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 1.3e-163 580.1 377 75.3
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 3.8e-163 578.6 384 74.5
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.0e-163 578.2 356 81.5
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 5.0e-163 578.2 375 75.5
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 8.5e-163 577.4 378 75.7
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.1e-162 577.0 385 74.8
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 3.2e-162 575.5 377 74.0
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 7.2e-162 574.3 378 73.8
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.6e-161 573.2 379 74.1
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 2.8e-161 572.4 379 72.3
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 6.1e-161 571.2 377 73.5
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.8e-160 569.7 375 75.7
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.0e-160 568.5 382 73.8
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 5.2e-160 568.2 377 73.5
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 2.6e-159 565.8 383 72.6
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 3.4e-159 565.5 373 73.7
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 9.8e-159 563.9 377 73.2
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 9.8e-159 563.9 510 60.4
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 2.2e-158 562.8 377 73.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.4e-157 559.3 377 70.8
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 7.0e-157 557.8 378 74.1
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 4.5e-156 555.1 378 69.3
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.9e-155 552.4 377 70.0
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 4.3e-154 548.5 377 70.0
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.2e-153 547.0 376 72.6
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 1.8e-152 543.1 377 73.7
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 3.7e-150 535.4 354 73.7
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 3.7e-150 535.4 379 69.1
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 3.7e-150 535.4 344 76.5
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.8e-149 533.1 383 70.0
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 9.2e-149 530.8 386 67.4
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.6e-148 530.0 422 65.9
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 3.5e-148 528.9 379 69.1
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.6e-148 528.5 295 87.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 2.3e-147 526.2 306 84.0
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.9e-147 525.4 377 67.1
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 3.9e-147 525.4 380 69.7
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.5e-146 523.5 375 70.1
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.3e-146 521.9 379 67.8
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.6e-146 521.5 295 86.4
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 5.6e-146 521.5 376 68.1
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 7.3e-146 521.2 376 68.6
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 1.5e-143 513.5 376 69.4
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.9e-141 506.5 311 81.4
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.0e-136 488.8 305 79.3
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 4.0e-128 462.2 327 71.9
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.1e-121 439.9 385 62.6
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 4.7e-121 438.7 380 61.6
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.5e-119 433.7 307 71.7
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 4.9e-118 428.7 381 57.0
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 6.4e-118 428.3 265 78.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.0e-116 421.8 385 54.3
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 7.1e-109 398.3 401 50.6
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 4.6e-108 395.6 262 73.3
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 5.6e-106 388.7 377 53.3
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.1e-105 386.7 377 52.0
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 9.0e-104 381.3 229 79.9
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 3.2e-93 346.3 231 75.3
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 3.0e-91 339.7 266 64.3
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 5.0e-70 269.2 239 58.6
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 2.5e-61 240.4 143 81.1
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 3.2e-61 240.0 431 36.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 8.0e-60 235.3 391 37.1
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 4.1e-56 223.0 418 36.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.1e-56 223.0 147 75.5
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.8e-51 207.6 149 68.5
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 2.2e-41 174.1 111 76.6
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.9e-37 161.0 110 66.4
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 7.8e-31 139.0 183 41.5
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.4e-24 118.2 147 50.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-23 115.2 137 43.1
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.7e-22 111.3 63 82.5
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.9e-22 110.2 146 42.5
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.1e-21 108.6 99 58.6
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.7e-17 94.7 68 67.6
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.0e-14 85.5 111 40.5
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.5e-13 80.9 70 54.3
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.8e-11 74.7 36 97.2
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-11 73.2 72 50.0
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.2e-09 67.8 36 88.9
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.4e-08 65.1 100 38.0
SMO163G0069 Selaginella moellendorffii HOM05D020292 ORTHO05D007481 6.6e-06 56.2 82 37.8


User provided reference genes

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