Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 3.4e-291 1004.2 487 100.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.0e-247 857.8 487 84.0
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 5.7e-246 854.0 482 85.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 2.2e-242 842.0 476 84.7
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.7e-240 834.3 482 82.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.4e-236 822.0 472 82.2
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.6e-232 808.1 465 82.4
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.8e-208 728.8 473 71.0
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 4.9e-205 718.0 480 69.8
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 8.4e-205 717.2 470 71.5
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.4e-204 716.5 484 69.6
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 5.4e-204 714.5 481 70.3
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.6e-203 711.4 468 70.7
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 3.0e-202 708.8 481 68.6
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 3.9e-202 708.4 542 64.2
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.5e-201 706.4 472 71.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 5.6e-201 704.5 483 68.1
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 3.1e-199 698.7 483 67.7
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 5.2e-199 698.0 469 69.5
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 7.6e-198 694.1 501 66.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.3e-197 693.3 483 66.7
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 6.4e-197 691.0 486 67.1
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.4e-196 689.1 483 67.7
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 4.2e-196 688.3 465 69.9
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 3.5e-195 685.3 469 68.7
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 7.8e-195 684.1 472 68.6
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 2.3e-194 682.6 468 68.4
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 3.0e-194 682.2 461 69.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 5.1e-194 681.4 472 67.8
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 6.6e-194 681.0 468 67.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 3.3e-193 678.7 486 64.8
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 5.6e-193 677.9 468 68.6
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 9.6e-193 677.2 469 67.8
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.6e-192 676.4 469 67.8
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.8e-192 675.6 483 65.6
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 1.1e-191 673.7 472 66.9
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.9e-189 665.6 468 66.7
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-189 665.2 468 66.7
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 3.8e-189 665.2 468 66.2
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 6.0e-187 657.9 469 64.8
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 6.6e-186 654.4 468 66.5
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.9e-185 652.9 464 65.1
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.3e-184 650.2 481 65.1
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 3.6e-184 648.7 471 66.5
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 5.3e-183 644.8 471 66.2
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.0e-182 642.9 493 62.5
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.0e-182 642.9 493 62.5
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 7.6e-182 641.0 423 70.0
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.4e-180 636.0 470 63.8
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.3e-178 629.4 485 62.1
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 1.5e-177 626.7 479 62.4
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.5e-177 626.7 469 63.5
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.6e-177 624.8 469 63.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 3.7e-176 622.1 471 61.8
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 6.2e-176 621.3 473 62.8
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 9.0e-175 617.5 468 63.5
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.2e-174 617.1 489 59.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.5e-174 616.7 513 58.9
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.5e-174 616.7 466 62.0
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 6.5e-173 611.3 469 60.8
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 8.4e-173 610.9 472 61.4
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.9e-172 609.8 513 58.1
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.6e-171 605.1 484 60.7
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.8e-170 603.2 484 61.6
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 3.9e-170 602.1 469 60.1
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 5.1e-170 601.7 468 61.5
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 6.7e-170 601.3 541 56.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.5e-169 600.1 467 60.2
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.3e-169 599.0 475 60.0
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 3.7e-168 595.5 466 61.2
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 5.3e-167 591.7 486 59.7
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 8.5e-165 584.3 467 58.7
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 3.6e-163 578.9 466 59.0
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 3.6e-163 578.9 466 59.0
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 4.6e-163 578.6 467 58.7
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-162 577.0 466 59.0
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.3e-162 576.2 471 59.7
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.9e-162 575.5 584 51.2
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 6.7e-162 574.7 467 58.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 8.7e-162 574.3 466 58.4
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 3.3e-161 572.4 465 58.5
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.3e-160 570.5 469 58.8
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.6e-160 570.1 466 57.9
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.8e-160 568.5 471 60.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 3.4e-158 562.4 480 56.5
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 5.5e-156 555.1 480 55.8
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.2e-155 553.9 473 55.4
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 9.1e-151 537.7 495 51.9
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 5.0e-149 531.9 469 56.5
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.1e-145 520.8 476 52.9
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 3.7e-144 515.8 459 56.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 4.1e-143 512.3 430 55.6
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.1e-139 500.0 333 68.8
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.4e-137 492.3 297 78.1
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 1.5e-124 450.7 326 64.7
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 4.0e-122 442.6 300 70.3
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.8e-114 417.2 357 56.0
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 4.4e-105 386.0 487 40.5
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.4e-103 380.2 287 67.2
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 5.4e-103 379.0 287 67.2
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.6e-102 377.5 352 52.3
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 3.7e-96 356.3 489 41.1
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 4.9e-96 355.9 484 38.8
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.4e-95 354.4 266 67.3
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 6.6e-85 318.9 470 39.1
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.1e-83 313.9 224 64.7
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 9.3e-79 298.5 290 47.9
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 6.9e-74 282.3 262 55.7
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-67 261.5 223 57.8
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.8e-66 257.7 213 59.6
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 4.5e-57 226.5 356 35.4
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 3.8e-40 170.2 102 77.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.3e-36 157.1 353 32.6
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.4e-36 156.8 85 87.1
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.4e-29 135.2 104 60.6
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.2e-27 127.9 76 75.0
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.5e-23 114.4 75 72.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.0e-20 104.8 114 47.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.7e-17 94.4 100 46.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.2e-15 86.3 53 71.7
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-14 84.0 53 71.7
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 6.1e-14 83.2 50 78.0
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-13 82.0 53 71.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.8e-13 81.6 84 46.4
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.2e-13 80.1 53 66.0
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.2e-13 80.1 53 66.0
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 6.3e-11 73.2 75 49.3
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.1e-10 70.5 130 32.3
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 3.8e-08 63.9 101 41.6
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 6.5e-08 63.2 243 23.5
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.8e-06 57.8 53 54.7
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 4.7e-06 57.0 54 55.6


User provided reference genes

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