Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 3.7e-62 241.5 134 100.0
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 3.7e-22 108.6 140 56.4
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.7e-22 108.6 140 56.4
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.7e-22 108.6 140 55.7
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.3e-22 107.5 140 53.6
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.1e-21 107.1 140 55.0
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.2e-17 93.6 139 52.5
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 4.7e-17 91.7 136 47.8
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 1.1e-16 90.5 134 47.8
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 3.1e-16 89.0 137 47.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 2.6e-15 85.9 129 49.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 4.4e-15 85.1 133 45.9
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 4.4e-15 85.1 127 46.5
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-15 84.7 134 44.0
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 9.9e-15 84.0 133 45.1
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.7e-14 83.2 142 45.1
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 2.2e-14 82.8 139 51.8
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.2e-14 82.8 121 45.5
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.2e-14 82.8 134 43.3
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.9e-14 82.4 134 41.8
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.9e-14 82.4 134 45.5
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 4.9e-14 81.6 134 47.8
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 4.9e-14 81.6 135 45.9
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-14 81.3 67 61.2
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-13 80.5 140 48.6
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-13 80.5 67 59.7
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.4e-13 80.1 134 41.8
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.2e-13 79.0 69 60.9
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.2e-13 79.0 134 44.8
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.1e-13 78.6 134 43.3
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.1e-13 78.6 137 43.1
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 4.1e-13 78.6 138 47.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 5.4e-13 78.2 136 44.1
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 7.1e-13 77.8 67 59.7
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-12 77.0 128 46.1
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.1e-12 76.3 121 42.1
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.1e-12 76.3 138 46.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.1e-12 76.3 134 45.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 2.7e-12 75.9 130 43.8
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.5e-12 75.5 136 48.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 4.6e-12 75.1 135 44.4
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.8e-12 74.3 128 46.9
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 7.8e-12 74.3 128 46.9
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.0e-11 73.9 127 41.7
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.0e-11 73.9 126 44.4
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.0e-11 73.9 136 44.9
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 2.3e-11 72.8 67 61.2
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.3e-11 72.8 124 46.0
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 3.0e-11 72.4 134 40.3
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 3.0e-11 72.4 134 40.3
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 3.0e-11 72.4 135 45.9
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.0e-11 72.4 124 48.4
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.9e-11 72.0 134 39.6
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.6e-11 71.2 68 58.8
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.6e-11 71.2 135 43.7
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 8.6e-11 70.9 134 38.8
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.6e-11 70.9 68 58.8
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 8.6e-11 70.9 135 41.5
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.5e-10 70.1 134 41.0
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.9e-10 69.7 134 40.3
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.9e-10 69.7 106 43.4
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 4.3e-10 68.6 134 44.8
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 4.3e-10 68.6 132 41.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 4.3e-10 68.6 67 55.2
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 4.3e-10 68.6 73 53.4
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 7.3e-10 67.8 137 41.6
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.2e-09 67.0 134 44.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.6e-09 66.6 134 41.0
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.1e-09 66.2 73 54.8
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.1e-09 66.2 134 38.8
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.1e-09 66.2 67 56.7
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 2.8e-09 65.9 135 42.2
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.7e-09 65.1 136 39.7
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 6.2e-09 64.7 67 52.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 6.2e-09 64.7 100 42.0
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 6.2e-09 64.7 69 49.3
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 8.1e-09 64.3 67 50.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.1e-08 63.9 139 35.3
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.8e-08 63.2 135 40.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.8e-08 63.2 70 51.4
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.4e-08 62.8 139 41.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 2.4e-08 62.8 127 39.4
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.4e-08 62.8 67 49.3
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.1e-08 62.4 136 43.4
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 4.0e-08 62.0 134 38.1
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.0e-08 62.0 68 50.0
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 4.0e-08 62.0 137 38.7
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.0e-08 62.0 67 52.2
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.2e-08 61.6 137 39.4
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.8e-08 61.2 134 42.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 6.8e-08 61.2 122 40.2
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 6.8e-08 61.2 127 40.9
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 6.8e-08 61.2 135 40.0
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.2e-07 60.5 122 41.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-07 60.5 121 40.5
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.5e-07 60.1 67 52.2
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.5e-07 60.1 67 52.2
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.5e-07 60.1 134 39.6
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 2.0e-07 59.7 136 43.4
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.0e-07 59.7 134 37.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.6e-07 59.3 132 37.1
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 2.6e-07 59.3 112 42.9
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 3.4e-07 58.9 67 50.7
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 3.4e-07 58.9 69 52.2
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 4.4e-07 58.5 68 52.9
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 4.4e-07 58.5 67 50.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 4.4e-07 58.5 131 37.4
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.8e-07 58.2 142 36.6
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 7.6e-07 57.8 63 52.4
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-06 56.6 121 38.0
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.7e-06 56.6 67 46.3
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.2e-06 56.2 127 34.6
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.9e-06 55.8 68 50.0
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.9e-06 55.8 136 39.0
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 2.9e-06 55.8 75 46.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.8e-06 55.5 137 39.4
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 8.4e-06 54.3 129 35.7
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 8.4e-06 54.3 67 49.3


User provided reference genes

Program Settings