Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 2.0e-52 208.8 103 100.0
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 2.0e-23 112.5 77 63.6
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 3.5e-20 101.7 99 51.5
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 9.6e-18 93.6 96 53.1
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 9.6e-18 93.6 96 53.1
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 2.1e-17 92.4 100 52.0
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 6.2e-17 90.9 98 49.0
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 2.4e-16 89.0 103 49.5
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 3.1e-16 88.6 99 51.5
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 6.9e-16 87.4 99 46.5
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 2.0e-15 85.9 97 49.5
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 2.6e-15 85.5 100 52.0
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 7.6e-15 84.0 102 48.0
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 1.3e-14 83.2 102 46.1
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 6.4e-14 80.9 102 49.0
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 1.9e-13 79.3 99 44.4
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 1.9e-13 79.3 99 44.4
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 4.2e-13 78.2 84 51.2
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 4.2e-13 78.2 102 46.1
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 7.1e-13 77.4 96 47.9
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 9.3e-13 77.0 39 84.6
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 9.3e-13 77.0 82 52.4
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 2.7e-12 75.5 102 48.0
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 4.6e-12 74.7 92 46.7
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 1.3e-11 73.2 98 45.9
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 2.3e-11 72.4 101 43.6
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.0e-11 72.0 87 46.0
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 8.7e-11 70.5 103 45.6
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.1e-10 70.1 105 42.9
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 1.5e-10 69.7 101 43.6
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 3.3e-10 68.6 76 51.3
Eucgr.G02368 Eucalyptus grandis HOM05D008579 ORTHO05D010245 3.3e-10 68.6 80 46.2
Manes.14G096100 Manihot esculenta HOM05D008579 ORTHO05D010245 3.3e-10 68.6 94 41.5
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 4.3e-10 68.2 75 44.0
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.3e-09 66.6 79 44.3
BcaB05g24410 Brassica carinata HOM05D010485 ORTHO05D010245 2.1e-09 65.9 84 45.2
MELO3C012204.2 Cucumis melo HOM05D008579 ORTHO05D010245 8.1e-09 63.9 49 59.2
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 1.4e-08 63.2 84 41.7
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 1.8e-08 62.8 90 42.2
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 3.1e-08 62.0 101 40.6
Sed0005216 Sechium edule HOM05D008579 ORTHO05D010245 3.1e-08 62.0 41 65.9
BcaC03g14985 Brassica carinata HOM05D010485 ORTHO05D010245 5.3e-08 61.2 84 40.5
A02p15330 Brassica napus HOM05D010485 ORTHO05D010245 5.3e-08 61.2 84 38.1
C02p25180 Brassica napus HOM05D010485 ORTHO05D010245 5.3e-08 61.2 84 40.5
BolC2t08597H Brassica oleracea HOM05D010485 ORTHO05D010245 5.3e-08 61.2 84 40.5
BraA02t06594Z Brassica rapa HOM05D010485 ORTHO05D010245 5.3e-08 61.2 84 38.1
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 6.9e-08 60.8 90 37.8
CARHR061590 Cardamine hirsuta HOM05D010485 ORTHO05D010245 1.2e-07 60.1 90 36.7
ClCG01G005780 Citrullus lanatus HOM05D008579 ORTHO05D010245 1.2e-07 60.1 53 54.7
Solyc05g010000.1 Solanum lycopersicum HOM05D022312 ORTHO05D014564 2.0e-07 59.3 100 32.0
BcaC03g17283 Brassica carinata HOM05D010662 ORTHO05D012734 2.6e-07 58.9 101 38.6
C02p52300 Brassica napus HOM05D010662 ORTHO05D012734 2.6e-07 58.9 101 38.6
C04p37640 Brassica napus HOM05D010485 ORTHO05D010245 2.6e-07 58.9 84 36.9
BolC4t25334H Brassica oleracea HOM05D010485 ORTHO05D010245 2.6e-07 58.9 84 36.9
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 2.6e-07 58.9 86 39.5
Sopen05g005810 Solanum pennellii HOM05D022312 ORTHO05D014564 2.6e-07 58.9 105 34.3
CSS0039536 Camellia sinensis var. sinensis HOM05D008579 ORTHO05D010245 3.4e-07 58.5 51 58.8
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 4.5e-07 58.2 98 38.8
AT1G68765 Arabidopsis thaliana HOM05D010485 ORTHO05D010245 1.3e-06 56.6 90 37.8
BolC2t11312H Brassica oleracea HOM05D010662 ORTHO05D012734 1.3e-06 56.6 87 41.4
Eucgr.G02364 Eucalyptus grandis HOM05D008579 ORTHO05D010245 1.3e-06 56.6 38 57.9
AL2G27710 Arabidopsis lyrata HOM05D010485 ORTHO05D010245 1.7e-06 56.2 90 35.6
MELO3C005351.2 Cucumis melo HOM05D065573 ORTHO05D010245 1.7e-06 56.2 85 40.0
BraA02t08416Z Brassica rapa HOM05D010662 ORTHO05D012734 2.2e-06 55.8 86 38.4
Carub.0002s1533 Capsella rubella HOM05D010485 ORTHO05D010245 2.2e-06 55.8 93 36.6
THA.LOC104805239 Tarenaya hassleriana HOM05D010662 ORTHO05D012734 2.9e-06 55.5 86 37.2
BcaC08g46326 Brassica carinata HOM05D010485 ORTHO05D010245 3.8e-06 55.1 88 39.8
A02p33980 Brassica napus HOM05D010662 ORTHO05D012734 3.8e-06 55.1 98 35.7
A07p35150 Brassica napus HOM05D010485 ORTHO05D010245 3.8e-06 55.1 88 39.8
C06p41120 Brassica napus HOM05D010485 ORTHO05D010245 3.8e-06 55.1 88 39.8
BolC6t39313H Brassica oleracea HOM05D010485 ORTHO05D010245 3.8e-06 55.1 88 39.8
BraA07t31108Z Brassica rapa HOM05D010485 ORTHO05D010245 3.8e-06 55.1 88 39.8
CsaV3_5G028910 Cucumis sativus L. HOM05D065573 ORTHO05D010245 6.4e-06 54.3 47 55.3
Lsat_1_v5_gn_3_57261 Lactuca sativa HOM05D008579 ORTHO05D010245 6.4e-06 54.3 55 52.7
ECA246G2817 Erigeron canadensis HOM05D008579 ORTHO05D010245 8.4e-06 53.9 31 71.0


User provided reference genes

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