Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.0e-84 316.6 150 100.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-82 309.3 150 97.3
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-50 203.4 152 67.1
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 9.0e-49 197.2 150 66.7
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-47 193.4 142 66.2
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-47 192.2 139 66.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-47 192.2 141 67.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-47 192.2 139 66.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-47 192.2 151 65.6
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-47 192.2 151 65.6
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-47 192.2 151 65.6
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-47 192.2 152 67.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.9e-47 191.4 140 67.1
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 8.4e-47 190.7 140 69.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-46 189.5 151 64.2
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 4.2e-46 188.3 148 63.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 5.4e-46 188.0 152 64.5
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-45 186.4 151 62.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-45 186.4 151 62.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-45 186.4 151 62.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.6e-45 186.4 135 67.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.6e-45 184.9 135 65.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.7e-44 183.0 148 66.2
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.7e-44 180.6 135 65.2
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.7e-44 180.6 141 66.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-43 179.9 141 66.0
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.9e-43 179.5 135 62.2
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.5e-43 179.1 141 66.0
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 4.3e-43 178.3 144 62.5
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 7.3e-43 177.6 135 63.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.8e-42 175.6 146 59.6
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.6e-42 175.3 136 64.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 6.2e-42 174.5 141 59.6
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 8.1e-42 174.1 150 60.0
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 8.1e-42 174.1 135 63.0
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.1e-41 173.7 143 62.2
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-41 173.3 142 59.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.4e-41 173.3 147 59.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-41 172.9 142 59.9
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.1e-41 172.2 142 59.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.9e-41 171.0 141 58.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.9e-41 171.0 141 58.9
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 6.9e-41 171.0 135 60.7
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.9e-41 171.0 138 63.0
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-40 170.2 147 54.4
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.5e-40 169.9 135 58.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.5e-40 169.9 135 60.7
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.4e-40 168.7 136 56.6
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.4e-40 168.7 136 56.6
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 4.5e-40 168.3 144 58.3
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 7.6e-40 167.5 135 59.3
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 7.6e-40 167.5 135 59.3
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 9.9e-40 167.2 135 57.8
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.3e-39 166.8 135 60.0
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.3e-39 166.8 147 57.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.3e-39 166.8 135 60.7
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.7e-39 166.4 135 59.3
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.7e-39 166.4 135 59.3
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.7e-39 166.4 135 60.0
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.2e-39 166.0 142 57.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 2.9e-39 165.6 137 59.1
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 2.9e-39 165.6 137 59.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.9e-39 165.6 143 60.1
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.9e-39 165.6 139 56.8
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 3.8e-39 165.2 143 59.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 3.8e-39 165.2 135 60.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 3.8e-39 165.2 138 57.2
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.8e-39 165.2 145 57.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.8e-39 165.2 142 57.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.8e-39 165.2 142 57.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 3.8e-39 165.2 150 58.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.9e-39 164.9 141 56.0
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 6.4e-39 164.5 135 56.3
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 8.4e-39 164.1 135 60.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 8.4e-39 164.1 152 57.9
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.1e-38 163.7 156 55.8
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.1e-38 163.7 135 61.5
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.4e-38 163.3 136 59.6
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.4e-38 163.3 145 57.9
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.4e-38 163.3 135 58.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.9e-38 162.9 147 52.4
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.4e-38 162.5 135 57.8
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 2.4e-38 162.5 137 59.9
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 3.2e-38 162.2 135 57.8
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.2e-38 162.2 126 62.7
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 3.2e-38 162.2 148 56.8
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.2e-38 161.8 135 60.7
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 4.2e-38 161.8 135 58.5
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.2e-38 161.8 150 56.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.4e-38 161.4 132 59.1
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.1e-38 161.0 149 55.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 9.3e-38 160.6 135 57.8
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 9.3e-38 160.6 124 62.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.2e-37 160.2 145 55.9
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.6e-37 159.8 135 56.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.6e-37 159.8 135 58.5
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.1e-37 159.5 143 55.2
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.1e-37 159.5 145 55.9
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.1e-37 159.5 145 55.9
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.7e-37 159.1 143 58.0
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 3.5e-37 158.7 135 57.8
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-37 158.3 218 45.4
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 4.6e-37 158.3 136 58.1
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.6e-37 158.3 144 55.6
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.0e-37 157.9 144 55.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.9e-37 157.5 135 55.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.9e-37 157.5 139 54.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.9e-37 157.5 135 57.0
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.3e-36 156.8 145 55.2
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.3e-36 156.8 131 60.3
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.3e-36 156.8 135 56.3
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.8e-36 156.4 145 55.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.7e-36 154.5 141 55.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 8.7e-36 154.1 145 51.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-35 153.7 135 56.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.9e-35 152.9 135 50.4
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.9e-35 152.9 135 50.4
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.9e-35 152.9 141 54.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.5e-35 152.5 144 54.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 4.3e-35 151.8 131 56.5
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 4.3e-35 151.8 135 54.8
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 9.6e-35 150.6 106 70.8
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.2e-34 147.9 138 50.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 6.2e-34 147.9 144 53.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 6.2e-34 147.9 147 54.4
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.2e-34 147.9 134 55.2
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.1e-34 147.5 135 54.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.8e-33 146.4 184 46.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 3.1e-33 145.6 136 52.2
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.0e-33 144.1 146 55.5
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 9.0e-33 144.1 147 49.7
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-32 143.7 139 54.7
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 3.4e-32 142.1 148 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 7.6e-32 141.0 136 47.1
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 7.6e-32 141.0 144 49.3
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 3.8e-31 138.7 136 52.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.8e-31 138.7 98 64.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.4e-31 137.9 133 54.9
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 8.4e-31 137.5 132 46.2
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-30 136.3 144 46.5
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.4e-30 136.0 143 49.7
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 7.1e-30 134.4 118 61.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.1e-30 134.4 139 50.4
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 9.3e-30 134.0 139 48.9
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 7.9e-29 131.0 135 43.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-27 126.3 141 48.9
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.9e-27 126.3 144 45.1
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 3.3e-27 125.6 135 43.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 4.3e-27 125.2 98 62.2
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 9.0e-25 117.5 135 45.2
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.5e-24 116.7 113 53.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 7.6e-24 114.4 125 50.4
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.1e-22 110.5 134 45.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.5e-22 108.2 146 40.4
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-17 93.6 74 68.9
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.0e-16 89.7 137 38.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.9e-16 88.2 70 70.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-15 86.3 50 70.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 6.5e-15 84.7 128 41.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.1e-13 79.7 65 66.2
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.9e-12 75.5 50 58.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.7e-12 74.7 69 46.4
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-11 73.6 116 37.1
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 5.7e-11 71.6 77 48.1
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.3e-10 70.5 110 41.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.0e-07 60.8 28 75.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 6.5e-07 58.2 57 56.1
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-06 57.0 40 72.5


User provided reference genes

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