Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G293000 Prunus persica HOM05D008249 ORTHO05D010427 2.0e-43 178.7 91 100.0
VMungo1215G0100 Vigna mungo HOM05D008249 ORTHO05D010427 5.0e-18 94.4 84 66.7
Phvul.003G038500 Phaseolus vulgaris HOM05D008249 ORTHO05D010427 2.1e-16 89.0 87 58.6
Glyma.02G122400 Glycine max HOM05D008249 ORTHO05D010427 6.1e-16 87.4 89 58.4
Haze_11870 Corylus avellana HOM05D008249 ORTHO05D010427 7.9e-16 87.0 92 63.0
Glyma.01G064500 Glycine max HOM05D008249 ORTHO05D010427 7.9e-16 87.0 89 57.3
Medtr5g047220 Medicago truncatula HOM05D008249 ORTHO05D010427 5.1e-15 84.3 82 62.2
Manes.05G112900 Manihot esculenta HOM05D008249 ORTHO05D010427 8.8e-15 83.6 93 61.3
Potri.010G138700 Populus trichocarpa HOM05D008249 ORTHO05D010427 8.8e-15 83.6 88 59.1
PGR119G2439 Punica granatum HOM05D008249 ORTHO05D010427 5.7e-14 80.9 96 52.1
TPR.G38465 Trifolium pratense HOM05D008249 ORTHO05D010427 9.7e-14 80.1 83 60.2
Thecc.02G323600 Theobroma cacao HOM05D008249 ORTHO05D010427 2.2e-13 79.0 101 55.4
Manes.01G024800 Manihot esculenta HOM05D008249 ORTHO05D010427 3.7e-13 78.2 94 54.3
Sabra10G0107000 Salix brachista HOM05D008249 ORTHO05D010427 4.8e-13 77.8 88 58.0
Ciclev10033881m.g Citrus clementina HOM05D008249 ORTHO05D010427 2.4e-12 75.5 100 54.0
CiPaw.05G122300 Carya illinoinensis HOM05D008249 ORTHO05D010427 6.9e-12 73.9 93 58.1
RcHm_v2.0_Chr4g0437411 Rosa chinensis HOM05D008249 ORTHO05D010427 1.2e-11 73.2 89 60.7
Lj2g0003231 Lotus japonicus HOM05D008249 ORTHO05D010427 4.5e-11 71.2 91 53.8
Gohir.A03G106200 Gossypium hirsutum HOM05D008249 ORTHO05D010427 7.7e-11 70.5 91 52.7
Gohir.D02G131400 Gossypium hirsutum HOM05D008249 ORTHO05D010427 1.0e-10 70.1 95 50.5
Gorai.005G147300 Gossypium raimondii HOM05D008249 ORTHO05D010427 1.3e-10 69.7 95 50.5
Actinidia13403 Actinidia chinensis HOM05D000485 ORTHO05D000341 1.7e-10 69.3 88 53.4
Potri.008G109150 Populus trichocarpa HOM05D008249 ORTHO05D010427 2.9e-10 68.6 85 51.8
Potri.T139662 Populus trichocarpa HOM05D008249 ORTHO05D010427 2.9e-10 68.6 85 51.8
Duzib268G1830 Durio zibethinus HOM05D008249 ORTHO05D010427 8.5e-10 67.0 106 50.0
Lalb_Chr17g0341441 Lupinus albus HOM05D008249 ORTHO05D010427 8.5e-10 67.0 89 51.7
ClCG08G010570 Citrullus lanatus HOM05D008249 ORTHO05D010427 1.9e-09 65.9 88 50.0
Thhalv10019523m.g Eutrema salsugineum HOM05D008249 ORTHO05D010427 5.5e-09 64.3 91 50.5
Ah.02g126730 Amaranthus hybridus HOM05D001602 ORTHO05D001470 7.2e-09 63.9 92 51.1
Ah.03g138650 Amaranthus hybridus HOM05D008249 ORTHO05D010427 1.2e-08 63.2 87 52.9
COL.COLO4_27817 Corchorus olitorius HOM05D008249 ORTHO05D010427 1.2e-08 63.2 94 48.9
Carub.0002s1567 Capsella rubella HOM05D008249 ORTHO05D010427 4.7e-08 61.2 92 48.9
AL2G28100 Arabidopsis lyrata HOM05D008249 ORTHO05D010427 1.4e-07 59.7 91 48.4
AT1G69050 Arabidopsis thaliana HOM05D008249 ORTHO05D010427 1.8e-07 59.3 91 48.4
THA.LOC109116338 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 1.8e-07 59.3 110 41.8
Hma1.2p1_0428F.1_g150880 Hydrangea macrophylla HOM05D008249 ORTHO05D010427 3.0e-07 58.5 92 47.8
BcaB03g15456 Brassica carinata HOM05D008249 ORTHO05D010427 3.9e-07 58.2 83 49.4
Migut.L01167 Erythranthe guttata HOM05D008249 ORTHO05D010427 5.1e-07 57.8 90 45.6
THA.LOC104822892 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 5.1e-07 57.8 99 44.4
A02p15590 Brassica napus HOM05D008249 ORTHO05D010427 6.7e-07 57.4 82 48.8
C02p25760 Brassica napus HOM05D008249 ORTHO05D010427 6.7e-07 57.4 82 48.8
BolC2t08645H Brassica oleracea HOM05D008249 ORTHO05D010427 6.7e-07 57.4 82 48.8
BraA02t06620Z Brassica rapa HOM05D008249 ORTHO05D010427 6.7e-07 57.4 82 48.8
BolC6t38825H Brassica oleracea HOM05D008249 ORTHO05D010427 1.5e-06 56.2 83 48.2
A07p35440 Brassica napus HOM05D008249 ORTHO05D010427 2.0e-06 55.8 92 47.8
BraA07t31135Z Brassica rapa HOM05D008249 ORTHO05D010427 2.0e-06 55.8 92 47.8
BcaC08g45919 Brassica carinata HOM05D008249 ORTHO05D010427 4.4e-06 54.7 83 48.2
BcaC08g46348 Brassica carinata HOM05D008249 ORTHO05D010427 4.4e-06 54.7 91 47.3
C06p37200 Brassica napus HOM05D008249 ORTHO05D010427 4.4e-06 54.7 83 48.2
BcaC08g46347 Brassica carinata HOM05D008249 ORTHO05D010427 9.7e-06 53.5 91 48.4
BolC6t39354H Brassica oleracea HOM05D008249 ORTHO05D010427 9.7e-06 53.5 91 48.4


User provided reference genes

Program Settings