Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 7.5e-163 577.4 355 100.0
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.1e-105 387.5 361 74.0
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.9e-98 362.8 360 70.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 4.4e-70 269.2 347 59.4
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 4.1e-68 262.7 352 59.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.1e-68 262.7 350 59.4
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-67 260.8 361 65.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 5.9e-67 258.8 362 64.6
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.9e-67 258.8 362 64.6
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.7e-67 258.5 361 64.5
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.0e-66 258.1 362 65.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-65 254.6 347 57.6
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.1e-64 248.8 357 49.9
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 6.1e-64 248.8 359 55.4
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.0e-63 246.1 341 58.7
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.5e-62 244.2 353 56.1
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 3.4e-62 243.0 360 61.9
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.5e-62 241.9 351 55.3
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.5e-62 241.9 351 55.3
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.3e-61 241.1 357 55.7
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.7e-61 240.7 357 56.6
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-60 237.3 351 54.1
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 6.6e-58 228.8 359 52.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 8.6e-58 228.4 346 54.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.9e-57 227.3 356 52.0
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.5e-57 226.9 357 56.6
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.6e-56 224.2 354 52.5
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.1e-56 223.8 336 55.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 4.7e-56 222.6 352 54.3
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 8.0e-56 221.9 340 57.4
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 3.4e-54 216.5 353 53.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.2e-51 208.0 351 48.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.6e-51 206.1 352 52.3
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 7.8e-51 205.3 356 53.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.3e-50 204.5 359 51.5
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.7e-50 204.1 340 52.1
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.3e-50 203.8 367 54.2
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 8.6e-50 201.8 356 52.5
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.5e-49 200.3 359 56.5
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.5e-49 200.3 335 51.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.6e-49 199.1 353 45.0
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.6e-48 197.6 350 55.7
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.8e-48 196.8 354 53.1
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.1e-47 193.4 353 51.6
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 6.8e-47 192.2 351 51.9
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 6.8e-47 192.2 351 51.9
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 6.8e-47 192.2 324 51.2
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 8.9e-47 191.8 348 50.6
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-46 191.4 341 52.2
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.4e-46 189.5 349 49.0
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.5e-46 188.7 351 42.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 8.3e-45 185.3 371 47.4
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 4.1e-44 183.0 353 46.7
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.7e-43 180.3 356 51.4
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.5e-43 179.9 355 48.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-42 177.9 343 50.7
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.7e-42 177.6 293 45.4
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-42 177.2 357 39.8
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.1e-42 176.0 337 50.1
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.5e-41 174.5 258 49.2
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.9e-41 174.1 358 39.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.5e-41 173.7 362 38.1
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.5e-41 173.7 353 46.2
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.3e-41 173.3 351 47.0
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.3e-41 172.9 333 50.5
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 9.5e-41 171.8 362 38.7
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.1e-39 168.3 372 46.5
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 3.1e-39 166.8 358 38.3
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.0e-39 166.4 248 59.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 6.8e-39 165.6 322 51.2
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.9e-39 165.2 353 38.8
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.5e-38 164.5 238 59.7
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.0e-38 164.1 358 38.0
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.4e-38 162.9 337 46.0
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.8e-38 162.5 366 37.2
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.7e-37 159.8 335 46.3
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 6.4e-37 159.1 347 47.6
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.2e-36 156.8 374 44.9
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 9.2e-36 155.2 352 42.3
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 9.2e-36 155.2 352 42.3
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.6e-35 152.9 242 57.0
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.0e-34 150.2 377 43.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.6e-34 149.1 333 46.5
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.1e-33 148.3 356 41.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 5.6e-33 146.0 318 40.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-33 146.0 350 43.4
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-33 146.0 350 43.4
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-33 146.0 350 43.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 9.6e-33 145.2 310 40.3
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.6e-32 144.4 324 51.5
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 4.7e-32 142.9 350 40.6
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 6.2e-32 142.5 339 43.7
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 8.1e-32 142.1 352 41.8
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 4.0e-31 139.8 352 42.0
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 6.8e-31 139.0 349 40.7
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-30 138.3 352 42.0
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.2e-30 138.3 354 39.3
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 7.6e-30 135.6 351 41.6
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.9e-29 133.7 353 41.6
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 2.9e-29 133.7 353 41.4
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.9e-29 133.7 343 36.7
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 3.8e-29 133.3 343 41.4
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.9e-28 131.0 353 40.5
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.4e-28 130.6 355 40.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 4.2e-28 129.8 361 41.3
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 5.4e-28 129.4 366 34.2
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 5.4e-28 129.4 356 35.7
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 7.1e-28 129.0 353 40.2
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 7.1e-28 129.0 358 40.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 7.1e-28 129.0 353 40.2
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 7.1e-28 129.0 352 37.2
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.5e-27 126.7 194 46.9
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-27 125.6 357 40.9
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.0e-26 123.6 336 40.5
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 3.0e-26 123.6 355 35.2
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 3.0e-26 123.6 353 39.7
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 3.0e-26 123.6 340 37.4
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 5.1e-26 122.9 353 39.9
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.3e-25 120.2 361 37.4
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.3e-25 120.2 343 44.0
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 4.3e-25 119.8 357 39.2
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 7.3e-25 119.0 354 34.2
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.3e-24 118.2 407 43.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.3e-24 118.2 349 41.5
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.6e-24 117.9 356 38.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 4.8e-24 116.3 356 40.7
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.2e-24 115.9 342 34.5
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.4e-23 114.8 352 40.9
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.5e-22 111.3 349 38.1
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 3.4e-22 110.2 352 43.8
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 9.9e-22 108.6 356 38.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.2e-21 107.5 323 41.2
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 8.4e-21 105.5 342 34.8
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.7e-19 100.5 315 43.8
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-18 98.2 338 30.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.7e-18 97.8 348 38.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.9e-17 94.4 255 49.8
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 4.3e-17 93.2 364 37.1
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.3e-16 91.7 351 42.5
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 3.6e-16 90.1 342 32.5
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 2.0e-14 84.3 343 35.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.4e-14 83.6 351 38.5
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 4.5e-14 83.2 331 33.5
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 2.2e-13 80.9 338 36.7
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-10 72.0 284 33.8
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 1.8e-10 71.2 286 33.6
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 2.1e-08 64.3 60 58.3
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.4e-07 61.6 311 28.3


User provided reference genes

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