Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G289900 Prunus persica HOM05D000013 ORTHO05D020697 1.9e-19 98.2 50 100.0
Prupe.3G225700 Prunus persica HOM05D000013 ORTHO05D000011 3.7e-15 84.0 48 85.4
Prupe.3G225900 Prunus persica HOM05D000013 ORTHO05D000011 1.2e-10 68.9 39 79.5
FvH4_6g44109 Fragaria vesca HOM05D000013 ORTHO05D000011 1.6e-10 68.6 48 66.7
FvH4_6g44200 Fragaria vesca HOM05D000013 ORTHO05D000011 1.6e-10 68.6 48 66.7
FAN14G0945 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.6e-10 68.6 48 66.7
FAN14G4303 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.6e-10 68.6 48 66.7
FvH4_6g44140 Fragaria vesca HOM05D000013 ORTHO05D000011 1.8e-09 65.1 47 66.0
FAN02G3446 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.7e-09 63.2 46 65.2
FAN05G2288 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.7e-09 63.2 48 62.5
FAN05G3002 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.7e-09 63.2 48 62.5
FAN05G5589 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.7e-09 63.2 48 62.5
FvH4_6g44105 Fragaria vesca HOM05D000013 ORTHO05D020697 8.8e-09 62.8 47 61.7
FvH4_6g44241 Fragaria vesca HOM05D000013 ORTHO05D000011 8.8e-09 62.8 48 60.4
FAN02G4439 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.8e-09 62.8 48 62.5
FAN02G3087 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-08 62.0 48 60.4
RcHm_v2.0_Chr1g0326521 Rosa chinensis HOM05D000013 ORTHO05D000011 1.5e-08 62.0 46 63.0
FvH4_1g07120 Fragaria vesca HOM05D000013 ORTHO05D010607 2.0e-08 61.6 48 60.4
FvH4_6g44106 Fragaria vesca HOM05D000013 ORTHO05D000011 2.0e-08 61.6 48 60.4
FvH4_6g44107 Fragaria vesca HOM05D000013 ORTHO05D000011 2.0e-08 61.6 48 62.5
FAN02G3386 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.0e-08 61.6 46 63.0
FAN14G0815 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.0e-08 61.6 48 62.5
RcHm_v2.0_Chr7g0225151 Rosa chinensis HOM05D000013 ORTHO05D000011 2.0e-08 61.6 47 59.6
RcHm_v2.0_Chr2g0161431 Rosa chinensis HOM05D000013 ORTHO05D000011 2.6e-08 61.2 48 62.5
FAN09G1411 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.4e-08 60.5 48 56.2
FAN14G0826 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.4e-08 60.5 43 65.1
MD09G1100400 Malus domestica HOM05D000013 ORTHO05D000011 4.4e-08 60.5 47 59.6
MD09G1100900 Malus domestica HOM05D000013 ORTHO05D000011 4.4e-08 60.5 48 56.2
FAN14G3415 Fragaria x ananassa HOM05D000013 ORTHO05D000011 5.7e-08 60.1 47 61.7
FvH4_6g44108 Fragaria vesca HOM05D000013 ORTHO05D000011 7.4e-08 59.7 48 60.4
FAN14G0385 Fragaria x ananassa HOM05D000013 ORTHO05D020697 7.4e-08 59.7 48 60.4
FAN14G3423 Fragaria x ananassa HOM05D000013 ORTHO05D000011 7.4e-08 59.7 48 60.4
RcHm_v2.0_Chr1g0318601 Rosa chinensis HOM05D000013 ORTHO05D000011 7.4e-08 59.7 47 57.4
FAN02G2155 Fragaria x ananassa HOM05D000013 ORTHO05D046616 9.7e-08 59.3 45 62.2
FAN02G2899 Fragaria x ananassa HOM05D000013 ORTHO05D000011 9.7e-08 59.3 47 59.6
RcHm_v2.0_Chr1g0328741 Rosa chinensis HOM05D000013 ORTHO05D000011 9.7e-08 59.3 41 63.4
CiPaw.06G129400 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.3e-07 58.9 35 74.3
MD17G1088400 Malus domestica HOM05D000013 ORTHO05D000011 1.3e-07 58.9 48 58.3
Prupe.3G224900 Prunus persica HOM05D000013 ORTHO05D000011 1.7e-07 58.5 42 64.3
Prupe.3G225100 Prunus persica HOM05D000013 ORTHO05D000011 1.7e-07 58.5 35 71.4
Prupe.3G225400 Prunus persica HOM05D000013 ORTHO05D000011 1.7e-07 58.5 48 56.2
RcHm_v2.0_Chr4g0399551 Rosa chinensis HOM05D000013 ORTHO05D000011 1.7e-07 58.5 47 59.6
FvH4_6g44100 Fragaria vesca HOM05D000013 ORTHO05D000011 2.2e-07 58.2 40 65.0
RcHm_v2.0_Chr4g0405701 Rosa chinensis HOM05D000013 ORTHO05D000011 2.2e-07 58.2 35 71.4
FvH4_6g44190 Fragaria vesca HOM05D000013 ORTHO05D000011 3.7e-07 57.4 35 71.4
FAN05G2197 Fragaria x ananassa HOM05D000013 ORTHO05D000011 3.7e-07 57.4 35 71.4
MD09G1095200 Malus domestica HOM05D000013 ORTHO05D000011 3.7e-07 57.4 46 58.7
MD09G1096000 Malus domestica HOM05D000013 ORTHO05D000011 4.8e-07 57.0 47 57.4
Prupe.3G225200 Prunus persica HOM05D000013 ORTHO05D000689 4.8e-07 57.0 39 66.7
RcHm_v2.0_Chr2g0160651 Rosa chinensis HOM05D000013 ORTHO05D000011 4.8e-07 57.0 36 66.7
RcHm_v2.0_Chr2g0160831 Rosa chinensis HOM05D000013 ORTHO05D000011 4.8e-07 57.0 36 66.7
Lj3g0002765 Lotus japonicus HOM05D000013 ORTHO05D000011 6.3e-07 56.6 38 65.8
MD09G1095900 Malus domestica HOM05D000013 ORTHO05D000011 6.3e-07 56.6 43 60.5
MD09G1096200 Malus domestica HOM05D000013 ORTHO05D000689 6.3e-07 56.6 35 68.6
CANSAT54G2966 Cannabis sativa HOM05D000013 ORTHO05D000011 8.2e-07 56.2 41 58.5
FvH4_4g01160 Fragaria vesca HOM05D000013 ORTHO05D000011 8.2e-07 56.2 35 71.4
MD09G1094400 Malus domestica HOM05D000013 ORTHO05D000011 8.2e-07 56.2 43 60.5
RcHm_v2.0_Chr5g0066841 Rosa chinensis HOM05D000013 ORTHO05D000011 8.2e-07 56.2 47 57.4
CiPaw.06G129600 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.1e-06 55.8 35 71.4
CiPaw.06G130300 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.1e-06 55.8 35 71.4
FvH4_6g44061 Fragaria vesca HOM05D000013 ORTHO05D000011 1.1e-06 55.8 35 71.4
FvH4_6g44063 Fragaria vesca HOM05D000013 ORTHO05D000011 1.1e-06 55.8 35 71.4
FAN09G0738 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.1e-06 55.8 35 71.4
VMungo1127G0101 Vigna mungo HOM05D000013 ORTHO05D000011 1.1e-06 55.8 47 55.3
VMungo1127G1302 Vigna mungo HOM05D000013 ORTHO05D000011 1.1e-06 55.8 47 55.3
CANSAT54G1008 Cannabis sativa HOM05D000013 ORTHO05D000011 1.4e-06 55.5 40 60.0
Cc11_g05150 Coffea canephora HOM05D000013 ORTHO05D000011 1.4e-06 55.5 48 56.2
FAN05G0649 Fragaria x ananassa HOM05D000013 ORTHO05D000071 1.4e-06 55.5 44 59.1
RcHm_v2.0_Chr2g0160891 Rosa chinensis HOM05D000013 ORTHO05D000011 1.4e-06 55.5 46 54.3
RcHm_v2.0_Chr2g0161001 Rosa chinensis HOM05D000013 ORTHO05D000071 1.4e-06 55.5 35 68.6
RcHm_v2.0_Chr4g0405661 Rosa chinensis HOM05D000013 ORTHO05D000011 1.8e-06 55.1 39 64.1
RcHm_v2.0_Chr4g0405681 Rosa chinensis HOM05D000013 ORTHO05D000011 1.8e-06 55.1 47 57.4
CANSAT54G2225 Cannabis sativa HOM05D000013 ORTHO05D000011 2.4e-06 54.7 40 60.0
Cpa.g.sc27.167 Carica papaya HOM05D000013 ORTHO05D000011 2.4e-06 54.7 44 52.3
Ciclev10027427m.g Citrus clementina HOM05D000013 ORTHO05D000011 2.4e-06 54.7 43 58.1
Haze_13017 Corylus avellana HOM05D000013 ORTHO05D000011 2.4e-06 54.7 43 55.8
CiPaw.06G130400 Carya illinoinensis HOM05D000013 ORTHO05D000011 4.1e-06 53.9 35 68.6
Cc11_g05120 Coffea canephora HOM05D000013 ORTHO05D000011 4.1e-06 53.9 38 60.5
Haze_13085 Corylus avellana HOM05D000013 ORTHO05D000011 4.1e-06 53.9 41 56.1
Duzib268G1517 Durio zibethinus HOM05D000013 ORTHO05D000011 4.1e-06 53.9 46 50.0
FvH4_6g44240 Fragaria vesca HOM05D000013 ORTHO05D000011 4.1e-06 53.9 35 65.7
FAN02G2367 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.1e-06 53.9 44 59.1
Prupe.3G225300 Prunus persica HOM05D000013 ORTHO05D000011 4.1e-06 53.9 39 64.1
Eucgr.F00843 Eucalyptus grandis HOM05D000013 ORTHO05D000011 5.3e-06 53.5 38 60.5
HanXRQChr11g0332301 Helianthus annuus HOM05D000013 ORTHO05D000011 5.3e-06 53.5 33 66.7
Lj3g0006398 Lotus japonicus HOM05D000013 ORTHO05D000011 5.3e-06 53.5 42 54.8
SGA_v2.0_scaffold77G25176 Striga asiatica HOM05D000013 ORTHO05D000011 5.3e-06 53.5 35 60.0
arahy.Tifrunner.gnm1.ann1.V3B20E Arachis hypogaea HOM05D000013 ORTHO05D000011 7.0e-06 53.1 38 57.9
arahy.Tifrunner.gnm1.ann1.Z3WTGJ Arachis hypogaea HOM05D000013 ORTHO05D000011 7.0e-06 53.1 45 48.9
ECA233G5332 Erigeron canadensis HOM05D000004 ORTHO05D000011 7.0e-06 53.1 39 53.8
Migut.M01842 Erythranthe guttata HOM05D000013 ORTHO05D000011 7.0e-06 53.1 40 55.0
Eucgr.F01025 Eucalyptus grandis HOM05D000013 ORTHO05D000011 7.0e-06 53.1 38 60.5
Eucgr.F03371 Eucalyptus grandis HOM05D000013 ORTHO05D000011 7.0e-06 53.1 45 55.6
FvH4_6g44064 Fragaria vesca HOM05D000013 ORTHO05D000011 7.0e-06 53.1 54 48.1
FAN02G0143 Fragaria x ananassa HOM05D000013 ORTHO05D000689 7.0e-06 53.1 54 48.1
FAN05G0868 Fragaria x ananassa HOM05D000013 ORTHO05D000011 7.0e-06 53.1 54 48.1
Glyma.12G145400 Glycine max HOM05D000013 ORTHO05D000011 7.0e-06 53.1 47 55.3
Lsat_1_v5_gn_5_5521 Lactuca sativa HOM05D000013 ORTHO05D000011 7.0e-06 53.1 38 57.9
Lj1C858T17 Lonicera japonica HOM05D000013 ORTHO05D000011 7.0e-06 53.1 35 62.9
Medtr5g055070 Medicago truncatula HOM05D000013 ORTHO05D000011 7.0e-06 53.1 42 59.5
QL06p043587 Quercus lobata HOM05D000013 ORTHO05D000011 7.0e-06 53.1 46 47.8
QL09p047636 Quercus lobata HOM05D000013 ORTHO05D000011 7.0e-06 53.1 46 47.8
CANSAT64G2688 Cannabis sativa HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
CAN.G416.27 Capsicum annuum HOM05D000013 ORTHO05D000011 9.1e-06 52.8 42 52.4
CiPaw.06G130000 Carya illinoinensis HOM05D000013 ORTHO05D000011 9.1e-06 52.8 35 68.6
Cc05_g12890 Coffea canephora HOM05D000013 ORTHO05D000011 9.1e-06 52.8 38 60.5
Cc08_g04420 Coffea canephora HOM05D000013 ORTHO05D000011 9.1e-06 52.8 38 60.5
Haze_13024 Corylus avellana HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
Haze_13043 Corylus avellana HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
Haze_13047 Corylus avellana HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
Haze_13048 Corylus avellana HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
Dinv02837 Davidia involucrata HOM05D000013 ORTHO05D000011 9.1e-06 52.8 38 57.9
Eucgr.F03370 Eucalyptus grandis HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 55.8
FvH4_3g03300 Fragaria vesca HOM05D000013 ORTHO05D000011 9.1e-06 52.8 48 54.2
FvH4_6g51830 Fragaria vesca HOM05D000013 ORTHO05D000011 9.1e-06 52.8 47 53.2
FAN05G3305 Fragaria x ananassa HOM05D000013 ORTHO05D000011 9.1e-06 52.8 35 65.7
Lj3g0026891 Lotus japonicus HOM05D000013 ORTHO05D000011 9.1e-06 52.8 42 54.8
MD09G1094800 Malus domestica HOM05D000013 ORTHO05D000689 9.1e-06 52.8 35 65.7
Oeu029797.1 Olea europaea HOM05D000013 ORTHO05D000011 9.1e-06 52.8 44 47.7
Phvul.011G152700 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 9.1e-06 52.8 47 42.6
RcHm_v2.0_Chr1g0326551 Rosa chinensis HOM05D000013 ORTHO05D000011 9.1e-06 52.8 41 61.0
RcHm_v2.0_Chr1g0326591 Rosa chinensis HOM05D000013 ORTHO05D000011 9.1e-06 52.8 41 61.0
Thecc.07G063300 Theobroma cacao HOM05D000013 ORTHO05D000011 9.1e-06 52.8 43 53.5
Thecc.07G067200 Theobroma cacao HOM05D000013 ORTHO05D000011 9.1e-06 52.8 46 54.3
TAR627G1179 Trochodendron aralioides HOM05D000013 ORTHO05D000011 9.1e-06 52.8 44 56.8
vmacro11793 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 9.1e-06 52.8 38 57.9
GSVIVG01014500001 Vitis vinifera HOM05D000013 ORTHO05D000011 9.1e-06 52.8 33 66.7


User provided reference genes

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