Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.5e-132 476.1 231 100.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 4.1e-125 451.4 226 94.7
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.5e-122 441.0 230 90.0
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 7.2e-122 440.7 230 90.9
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.2e-121 439.9 230 90.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-121 439.5 230 90.0
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.6e-121 438.0 226 91.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-120 436.4 230 89.6
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 4.3e-119 431.4 226 88.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 5.7e-119 431.0 225 88.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 7.4e-119 430.6 225 89.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.4e-119 430.6 226 88.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.2e-118 429.1 226 89.8
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.8e-118 428.7 225 88.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.8e-118 428.7 226 88.5
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.1e-117 426.8 225 88.4
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.4e-117 426.4 225 88.0
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 5.3e-117 424.5 225 87.1
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.9e-117 424.1 226 87.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 87.9
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 3.4e-116 421.8 224 88.4
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.9e-116 421.0 221 91.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 7.7e-116 420.6 221 90.0
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.8e-115 418.3 226 88.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.0e-115 417.9 224 86.6
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 8.5e-115 417.2 232 84.9
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.1e-114 416.8 224 86.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.9e-114 416.0 225 86.2
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.9e-114 416.0 224 86.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.2e-114 415.2 226 86.7
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.2e-114 415.2 221 86.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 3.2e-114 415.2 216 89.4
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 3.2e-114 415.2 224 86.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 3.2e-114 415.2 229 84.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.2e-114 414.8 224 87.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.2e-114 414.8 226 86.3
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 7.2e-114 414.1 225 84.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 9.4e-114 413.7 224 86.6
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 9.4e-114 413.7 231 84.0
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.6e-113 412.9 222 86.5
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.6e-113 412.9 221 85.5
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.1e-113 412.5 225 84.9
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 2.1e-113 412.5 225 84.9
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.7e-113 412.1 224 86.2
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.7e-113 412.1 225 85.8
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.1e-113 411.0 222 85.6
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 6.1e-113 411.0 211 89.6
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 7.9e-113 410.6 224 86.2
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 86.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-112 409.8 224 84.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.4e-112 409.8 225 84.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 86.4
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.3e-112 409.1 224 83.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 225 84.4
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 211 89.1
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.9e-112 408.3 224 84.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.1e-112 407.9 222 87.8
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.1e-112 407.9 228 84.6
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 6.7e-112 407.5 225 82.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 6.7e-112 407.5 224 84.4
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 8.8e-112 407.1 222 85.6
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.1e-111 406.8 216 87.0
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.5e-111 406.4 225 84.0
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.0e-111 406.0 227 81.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.0e-111 406.0 221 84.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 2.0e-111 406.0 225 84.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.0e-111 406.0 225 84.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.6e-111 405.6 224 85.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 2.6e-111 405.6 225 83.6
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.6e-111 405.6 225 83.6
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.6e-111 405.6 224 85.3
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 3.3e-111 405.2 223 84.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 83.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 3.3e-111 405.2 223 84.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 3.3e-111 405.2 223 84.3
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 82.6
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 7.4e-111 404.1 223 86.1
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 7.4e-111 404.1 225 83.6
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.3e-110 403.3 224 83.9
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.7e-110 402.9 221 85.1
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-110 402.9 223 83.9
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.7e-110 402.9 224 83.0
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.8e-110 402.1 225 83.1
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 83.5
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.7e-110 401.7 221 84.2
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 3.7e-110 401.7 224 81.7
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 82.6
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 6.3e-110 401.0 224 82.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 8.2e-110 400.6 223 82.5
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 8.2e-110 400.6 225 83.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 8.2e-110 400.6 225 83.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.1e-109 400.2 237 81.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.4e-109 399.1 225 82.7
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 84.2
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.4e-109 399.1 248 77.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 5.3e-109 397.9 226 82.3
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 5.3e-109 397.9 225 84.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 5.3e-109 397.9 221 83.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 6.9e-109 397.5 224 83.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 82.6
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 82.6
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 82.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.6e-108 395.6 225 82.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 225 82.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 5.9e-108 394.4 224 83.0
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.7e-108 394.0 251 75.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.0e-107 393.7 219 84.0
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.8e-107 391.7 221 82.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 5.0e-107 391.3 225 81.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.5e-107 390.6 231 80.1
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 9.4e-106 387.1 227 79.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.7e-105 385.6 217 81.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.8e-104 382.9 217 81.1
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 5.2e-104 381.3 215 83.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.4e-103 377.5 286 66.8
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.3e-102 374.4 215 81.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-99 366.3 208 82.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 9.4e-98 360.5 221 73.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.3e-96 355.9 228 75.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.1e-90 337.0 221 69.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.1e-90 337.0 222 69.8
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 6.8e-88 327.8 218 68.3
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.7e-86 322.0 222 67.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 6.3e-86 321.2 164 95.7
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.0e-80 302.0 161 88.8
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.1e-77 292.4 169 78.1
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.1e-73 278.1 153 81.7
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.2e-71 273.9 160 75.6
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.7e-70 270.0 219 57.1
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.7e-68 262.7 131 87.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.8e-63 245.0 170 70.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 3.9e-59 232.3 221 50.7
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 3.9e-59 232.3 209 54.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 7.3e-58 228.0 130 79.2
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.2e-55 220.7 217 47.9
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.4e-53 211.8 115 80.9
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.2e-52 210.7 148 74.3
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.5e-52 209.1 111 87.4
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.9e-51 205.7 114 78.9
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.3e-43 180.6 130 60.8
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.0e-40 169.1 93 81.7
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 3.8e-38 162.5 102 74.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 6.2e-33 145.2 225 34.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 5.3e-32 142.1 97 77.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.4e-29 133.3 75 86.7
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.2e-29 132.9 134 49.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-26 124.0 66 84.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.5e-26 123.2 61 91.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 9.6e-26 121.3 83 66.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.8e-25 119.0 78 78.2
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 4.9e-22 109.0 61 90.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.2e-21 106.3 64 65.6
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 5.5e-21 105.5 61 88.5
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.7e-20 103.2 54 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 6.0e-20 102.1 64 79.7
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 4.3e-18 95.9 63 76.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-17 94.0 64 68.8
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.7e-17 92.8 128 47.7
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 5.8e-15 85.5 100 47.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 6.5e-14 82.0 54 79.6
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.9e-12 75.1 50 72.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-09 67.4 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 6.9e-08 62.0 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.5e-07 59.3 35 80.0


User provided reference genes

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