Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 0.0e+00 1340.1 670 100.0
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.4e-298 1029.2 680 78.2
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 6.8e-298 1026.9 684 78.5
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 4.9e-280 967.6 681 74.0
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.2e-272 942.2 681 72.1
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 8.3e-272 940.3 681 72.0
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.5e-268 929.5 705 69.6
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.1e-266 923.3 675 71.3
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 3.5e-262 908.3 691 69.6
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.0e-261 906.7 712 67.7
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.5e-260 902.9 691 69.2
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 6.4e-256 887.5 679 68.5
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.1e-252 876.7 686 67.3
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 4.2e-247 858.2 683 66.5
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 1.5e-244 849.7 680 66.9
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 2.4e-242 842.4 676 64.9
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 9.0e-242 840.5 675 65.8
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 2.1e-238 829.3 680 64.7
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.3e-237 825.9 679 63.5
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 8.2e-235 817.4 678 63.9
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.4e-234 815.8 683 63.3
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 3.1e-234 815.5 656 65.5
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 3.1e-234 815.5 674 64.8
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 4.5e-233 811.6 678 63.1
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.2e-232 809.3 651 66.4
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 8.4e-232 807.4 678 63.3
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 3.2e-231 805.4 681 63.1
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 2.7e-230 802.4 677 61.9
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.9e-230 800.8 685 62.3
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 2.8e-227 792.3 683 62.4
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 4.8e-227 791.6 725 59.2
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 6.9e-226 787.7 674 61.7
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.6e-225 785.8 674 61.6
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 4.5e-225 785.0 674 61.7
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 5.9e-225 784.6 691 60.6
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 1.1e-223 780.4 679 61.3
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 4.6e-222 775.0 680 61.9
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 6.1e-222 774.6 674 61.3
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.0e-221 773.9 678 61.4
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 5.7e-220 768.1 681 61.1
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 2.8e-219 765.8 666 61.4
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 4.8e-219 765.0 681 60.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.8e-218 763.1 690 59.9
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 4.1e-218 761.9 721 58.5
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.0e-213 747.3 672 59.4
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.4e-213 746.9 683 59.3
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 3.0e-213 745.7 703 59.2
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.1e-212 743.8 674 59.3
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.5e-212 743.4 688 58.3
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 7.4e-212 741.1 685 58.4
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 3.7e-211 738.8 671 60.1
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 4.8e-211 738.4 671 59.9
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 6.3e-211 738.0 671 60.1
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 6.3e-211 738.0 676 58.7
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.8e-210 736.5 645 59.4
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 2.4e-210 736.1 706 56.9
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 4.1e-210 735.3 651 60.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 7.0e-210 734.6 670 59.7
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 7.0e-210 734.6 563 66.6
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 9.1e-210 734.2 672 59.4
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.6e-209 732.6 671 59.8
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.6e-209 732.6 681 59.5
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 2.6e-209 732.6 692 57.8
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.5e-209 732.3 678 59.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.5e-209 731.9 691 57.5
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.8e-208 728.8 679 59.4
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.2e-206 723.8 670 58.5
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.2e-206 723.8 681 58.6
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 4.7e-206 721.8 656 57.8
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.3e-205 719.5 677 57.9
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.5e-204 716.8 681 58.0
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 2.6e-204 716.1 674 58.6
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 2.9e-200 702.6 647 59.4
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 3.2e-199 699.1 646 57.1
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.0e-197 692.2 678 57.4
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.4e-194 683.7 549 64.3
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.6e-193 680.2 752 51.7
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 4.5e-193 678.7 688 54.4
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 5.5e-191 671.8 673 55.7
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.6e-188 662.9 647 55.0
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.7e-185 652.9 634 56.0
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 2.1e-182 643.3 704 52.0
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.8e-181 640.2 683 52.4
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.9e-171 606.3 668 52.1
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.6e-168 594.7 420 71.2
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 2.9e-163 579.7 438 67.4
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 7.1e-162 575.1 552 56.5
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.1e-159 567.8 453 66.0
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.9e-154 550.4 403 69.2
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.2e-150 537.7 696 45.8
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 1.0e-144 518.1 670 46.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.5e-143 514.2 641 47.0
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 4.3e-135 486.1 643 45.7
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 6.4e-131 472.2 282 81.2
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 3.0e-120 436.8 508 47.2
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 7.4e-119 432.2 489 48.9
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 6.9e-117 425.6 460 52.8
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.9e-114 417.5 467 51.6
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.2e-98 363.6 261 71.6
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.4e-96 358.2 567 41.3
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.8e-94 349.7 263 68.4
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 4.7e-89 333.2 195 83.1
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 3.0e-88 330.5 181 89.5
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 8.8e-88 328.9 263 68.1
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 2.2e-86 324.3 406 45.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.4e-85 321.6 372 51.3
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.0e-83 315.5 187 79.1
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 6.1e-81 306.2 440 40.9
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.3e-80 304.3 657 35.0
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 6.8e-80 302.8 575 34.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 7.7e-76 289.3 357 47.9
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.5e-74 285.0 357 47.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 6.8e-72 276.2 187 74.9
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-70 271.9 183 71.6
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 2.2e-70 271.2 321 51.1
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 2.9e-67 260.8 150 82.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 2.8e-65 254.2 363 39.9
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 3.0e-59 234.2 351 40.7
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 4.3e-58 230.3 130 84.6
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 3.2e-53 214.2 461 33.6
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.6e-35 152.9 212 42.0
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 2.6e-31 141.4 209 44.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 3.6e-25 120.9 151 51.0
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.8e-24 118.6 94 58.5
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 3.1e-24 117.9 119 47.9
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.3e-24 117.1 97 55.7
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 3.4e-23 114.4 255 32.9
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 1.8e-19 102.1 75 61.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 7.4e-18 96.7 236 32.2
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 1.1e-16 92.8 79 57.0
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 5.3e-16 90.5 97 45.4
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 8.4e-14 83.2 53 83.0
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 2.1e-12 78.6 55 69.1
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.0e-11 76.3 199 32.7
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 1.4e-08 65.9 54 66.7
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 9.0e-08 63.2 57 49.1


User provided reference genes

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