Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G287900 Prunus persica HOM05D000665 ORTHO05D000140 6.5e-108 394.0 194 100.0
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 6.1e-90 334.3 194 81.4
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 3.8e-76 288.5 152 92.1
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 7.2e-75 284.3 187 74.3
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 6.8e-57 224.6 136 77.9
FvH4_1g20120 Fragaria vesca HOM05D000665 ORTHO05D000140 3.5e-53 212.2 195 56.9
FAN19G1575 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.8e-49 199.9 195 54.4
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 8.9e-49 197.6 195 52.8
FvH4_4g15662 Fragaria vesca HOM05D000665 ORTHO05D000140 1.2e-42 177.2 195 50.3
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 2.0e-40 169.9 181 51.4
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.6e-34 149.1 201 41.8
FAN08G1969 Fragaria x ananassa HOM05D000665 ORTHO05D000140 6.4e-31 138.3 191 44.5
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 1.9e-30 136.7 196 39.3
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 2.4e-30 136.3 196 39.3
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.6e-29 133.7 193 42.0
FAN24G3328 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.6e-29 133.7 183 40.4
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 7.8e-29 131.3 196 38.3
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 1.3e-28 130.6 197 38.6
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 3.3e-27 125.9 190 37.4
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 1.5e-24 117.1 59 88.1
RcHm_v2.0_Chr3g0485151 Rosa chinensis HOM05D000665 ORTHO05D000140 2.6e-24 116.3 95 56.8
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 4.4e-24 115.5 203 34.5
FvH4_2g13781 Fragaria vesca HOM05D000665 ORTHO05D000140 1.3e-23 114.0 108 53.7
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 1.3e-23 114.0 190 35.8
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 2.9e-23 112.8 174 37.9
FAN24G0085 Fragaria x ananassa HOM05D000665 ORTHO05D000140 3.8e-23 112.5 108 52.8
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 3.8e-23 112.5 203 34.0
Prupe.5G049400 Prunus persica HOM05D000665 ORTHO05D000140 1.4e-22 110.5 63 85.7
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 1.9e-22 110.2 202 34.2
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 1.9e-22 110.2 196 35.2
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 7.1e-22 108.2 203 33.0
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 9.2e-22 107.8 190 33.2
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.6e-21 107.1 103 50.5
FAN27G0927 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.0e-20 104.4 147 43.5
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 1.0e-20 104.4 188 31.9
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 1.7e-20 103.6 202 32.7
FAN08G1549 Fragaria x ananassa HOM05D000665 ORTHO05D000140 6.6e-20 101.7 137 46.0
FAN08G3553 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.9e-19 100.1 100 54.0
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.2e-18 97.4 118 47.5
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 1.6e-18 97.1 138 39.9
Glyma.13G077400 Glycine max HOM05D000665 ORTHO05D000140 6.2e-18 95.1 186 32.8
Dinv13787 Davidia involucrata HOM05D000034 ORTHO05D000037 8.9e-17 91.3 195 30.3
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 7.6e-16 88.2 80 52.5
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 9.9e-16 87.8 193 30.6
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 3.8e-15 85.9 106 42.5
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 8.4e-15 84.7 63 58.7
FAN05G1512 Fragaria x ananassa HOM05D013617 ORTHO05D016313 3.2e-14 82.8 79 53.2
Glyma.02G179401 Glycine max HOM05D000665 ORTHO05D000140 3.2e-14 82.8 145 37.2
Glyma.05G095200 Glycine max HOM05D000665 ORTHO05D000140 4.2e-14 82.4 68 52.9
Migut.E01617 Erythranthe guttata HOM05D009145 ORTHO05D000140 7.1e-14 81.6 167 33.5
RcHm_v2.0_Chr5g0053961 Rosa chinensis HOM05D009145 ORTHO05D000140 7.1e-14 81.6 193 29.5
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 9.3e-14 81.3 61 60.7
Glyma.07G209700 Glycine max HOM05D000665 ORTHO05D000140 2.1e-13 80.1 94 42.6
Migut.C00054 Erythranthe guttata HOM05D000665 ORTHO05D000140 3.5e-13 79.3 167 33.5
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 1.3e-12 77.4 163 33.1
Lj2g0007472 Lotus japonicus HOM05D000034 ORTHO05D000037 3.9e-12 75.9 105 40.0
Psat1g190200 Pisum sativum HOM05D000665 ORTHO05D000140 3.9e-12 75.9 61 50.8
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 8.7e-12 74.7 48 60.4
Lj2g0005129 Lotus japonicus HOM05D000034 ORTHO05D000037 8.7e-12 74.7 48 70.8
RcHm_v2.0_Chr4g0405761 Rosa chinensis HOM05D000665 ORTHO05D000140 2.5e-11 73.2 159 29.6
SGA_v2.0_scaffold152G36847 Striga asiatica HOM05D000665 ORTHO05D000140 3.3e-11 72.8 102 37.3
EL10Ac9g20779 Beta vulgaris HOM05D009145 ORTHO05D000140 8.1e-10 68.2 193 26.4
FAN08G1891 Fragaria x ananassa HOM05D013617 ORTHO05D016313 8.1e-10 68.2 43 62.8
SGA_v2.0_scaffold3G01632 Striga asiatica HOM05D009666 ORTHO05D000277 1.1e-09 67.8 203 24.1
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.4e-09 67.4 198 27.8
EL10As10g23957 Beta vulgaris HOM05D009145 ORTHO05D000140 1.4e-09 67.4 192 28.6
Medtr4g009630 Medicago truncatula HOM05D000563 ORTHO05D000536 1.4e-09 67.4 45 62.2
COL.COLO4_20623 Corchorus olitorius HOM05D009145 ORTHO05D000140 2.4e-09 66.6 197 25.9
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.1e-09 66.2 212 25.0
Medtr0014s0040 Medicago truncatula HOM05D000665 ORTHO05D000140 5.3e-09 65.5 122 31.1
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.9e-09 65.1 208 24.5
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.9e-09 65.1 208 24.5
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.2e-08 64.3 201 26.4
EL10Ac4g08803 Beta vulgaris HOM05D009145 ORTHO05D000140 1.2e-08 64.3 193 28.0
FAN26G0104 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.2e-08 64.3 137 35.0
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.0e-08 63.5 208 24.5
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.0e-08 63.5 208 24.0
Gorai.004G043300 Gossypium raimondii HOM05D000034 ORTHO05D000277 2.6e-08 63.2 216 25.0
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.4e-08 62.8 195 25.6
Gorai.006G053700 Gossypium raimondii HOM05D000034 ORTHO05D000277 9.9e-08 61.2 194 23.7
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 9.9e-08 61.2 192 27.1
SGA_v2.0_scaffold134G34689 Striga asiatica HOM05D009145 ORTHO05D000140 9.9e-08 61.2 193 26.9
SGA_v2.0_scaffold235G43663 Striga asiatica HOM05D009666 ORTHO05D000277 9.9e-08 61.2 207 25.1
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 1.3e-07 60.8 168 28.6
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 1.3e-07 60.8 168 28.6
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.3e-07 60.8 200 25.0
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.7e-07 60.5 198 26.3
EL10Ac6g14168 Beta vulgaris HOM05D009145 ORTHO05D000140 1.7e-07 60.5 185 28.1
Hma1.2p1_1398F.1_g280820 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.7e-07 60.5 192 27.1
Actinidia25084 Actinidia chinensis HOM05D009145 ORTHO05D000140 2.2e-07 60.1 58 50.0
Hma1.2p1_0746F.1_g212360 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 2.2e-07 60.1 208 23.6
Hma1.2p1_0846F.1_g227800 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 2.2e-07 60.1 208 23.6
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 2.2e-07 60.1 202 24.8
TAR629G2189 Trochodendron aralioides HOM05D018317 ORTHO05D023175 2.2e-07 60.1 174 27.6
Atru.chr1.1500 Acer truncatum HOM05D000034 ORTHO05D000037 2.9e-07 59.7 141 31.2
EL10Ac1g02133 Beta vulgaris HOM05D009145 ORTHO05D000140 2.9e-07 59.7 186 29.6
FAN15G3570 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.9e-07 59.7 68 44.1
Medtr7g094990 Medicago truncatula HOM05D000034 ORTHO05D000277 2.9e-07 59.7 135 26.7
ECA240G3965 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.8e-07 59.3 184 26.1
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 3.8e-07 59.3 159 28.3
RcHm_v2.0_Chr6g0274461 Rosa chinensis HOM05D000034 ORTHO05D000277 3.8e-07 59.3 135 29.6
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 3.8e-07 59.3 135 29.6
SGA_v2.0_scaffold105G30384 Striga asiatica HOM05D000034 ORTHO05D000277 3.8e-07 59.3 80 33.8
Hma1.2p1_2109F.1_g314220 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 4.9e-07 58.9 192 26.6
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 4.9e-07 58.9 159 28.3
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.4e-07 58.5 155 28.4
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 6.4e-07 58.5 200 23.5
Atru.chr12.1422 Acer truncatum HOM05D000034 ORTHO05D000037 1.1e-06 57.8 130 32.3
EL10As1g23106 Beta vulgaris HOM05D000034 ORTHO05D000037 1.1e-06 57.8 178 28.1
COL.COLO4_02741 Corchorus olitorius HOM05D001221 ORTHO05D009285 1.1e-06 57.8 189 22.2
FAN09G3992 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.1e-06 57.8 207 25.6
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.1e-06 57.8 155 27.1
Hma1.2p1_0529F.1_g173280 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.1e-06 57.8 194 25.3
Hma1.2p1_1277F.1_g272250 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.1e-06 57.8 192 27.1
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.1e-06 57.8 95 33.7
vmacro15090 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.1e-06 57.8 193 23.8
Actinidia03627 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.4e-06 57.4 72 38.9
Aqoxy3G01675 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 1.4e-06 57.4 162 26.5
FAN13G2749 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.4e-06 57.4 45 55.6
Glyma.04G130400 Glycine max HOM05D000665 ORTHO05D000140 1.4e-06 57.4 189 24.9
Gorai.002G108500 Gossypium raimondii HOM05D000034 ORTHO05D000277 1.4e-06 57.4 99 33.3
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.4e-06 57.4 155 26.5
Nn1g01996 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.4e-06 57.4 202 26.2
Nn2g14680 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.4e-06 57.4 186 22.0
Dinv06479 Davidia involucrata HOM05D000034 ORTHO05D000277 1.9e-06 57.0 174 25.3
Rhsim01G0122400 Rhododendron simsii HOM05D007780 ORTHO05D000140 1.9e-06 57.0 171 26.3
EL10Ac2g04238 Beta vulgaris HOM05D009145 ORTHO05D000140 2.4e-06 56.6 166 28.3
Gorai.006G213400 Gossypium raimondii HOM05D000034 ORTHO05D000037 2.4e-06 56.6 99 33.3
Atru.chr12.1187 Acer truncatum HOM05D007780 ORTHO05D000140 3.2e-06 56.2 172 26.2
Gorai.013G119800 Gossypium raimondii HOM05D000034 ORTHO05D000277 3.2e-06 56.2 80 32.5
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.2e-06 56.2 155 29.0
Hma1.2p1_0165F.1_g073390 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.2e-06 56.2 208 22.6
Hma1.2p1_0386F.1_g141750 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 3.2e-06 56.2 169 26.6
MBI19_g34869_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.2e-06 56.2 92 34.8
CSS0021233 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-06 55.8 62 41.9
CANSAT25G0805 Cannabis sativa HOM05D000034 ORTHO05D000277 4.2e-06 55.8 187 26.7
Ciclev10001966m.g Citrus clementina HOM05D007780 ORTHO05D000140 4.2e-06 55.8 203 25.1
Dinv26538 Davidia involucrata HOM05D000034 ORTHO05D000277 4.2e-06 55.8 91 31.9
SGA_v2.0_scaffold103G30052 Striga asiatica HOM05D000034 ORTHO05D000277 4.2e-06 55.8 202 22.3
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 5.4e-06 55.5 135 28.9
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 5.4e-06 55.5 131 30.5
ECA240G4546 Erigeron canadensis HOM05D000034 ORTHO05D000277 5.4e-06 55.5 164 27.4
Rhsim03G0059900 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.4e-06 55.5 186 25.8
TAR376G0198 Trochodendron aralioides HOM05D000665 ORTHO05D000140 5.4e-06 55.5 71 39.4
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 7.1e-06 55.1 137 29.2
Dinv10900 Davidia involucrata HOM05D000034 ORTHO05D000277 7.1e-06 55.1 196 24.0
Gohir.D05G285000 Gossypium hirsutum HOM05D007780 ORTHO05D000140 7.1e-06 55.1 175 26.3
Gorai.009G300000 Gossypium raimondii HOM05D007780 ORTHO05D000140 7.1e-06 55.1 175 26.3
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 7.1e-06 55.1 120 29.2
TPR.G35402 Trifolium pratense HOM05D000034 ORTHO05D000277 7.1e-06 55.1 131 29.0
Actinidia01695 Actinidia chinensis HOM05D007780 ORTHO05D000140 9.3e-06 54.7 173 26.0
EL10Ac4g08060 Beta vulgaris HOM05D009145 ORTHO05D000140 9.3e-06 54.7 188 25.0
CSS0019130 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 9.3e-06 54.7 171 26.3
AUR62038998 Chenopodium quinoa HOM05D009145 ORTHO05D000140 9.3e-06 54.7 169 27.2
COL.COLO4_16082 Corchorus olitorius HOM05D000665 ORTHO05D000140 9.3e-06 54.7 180 26.7
Dinv15837 Davidia involucrata HOM05D000665 ORTHO05D000140 9.3e-06 54.7 189 24.9
ECA236G3356 Erigeron canadensis HOM05D001106 ORTHO05D000910 9.3e-06 54.7 164 27.4
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 9.3e-06 54.7 189 24.3
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 9.3e-06 54.7 157 27.4
Lj1g0019892 Lotus japonicus HOM05D000034 ORTHO05D000277 9.3e-06 54.7 156 26.3
MBI09_g32372_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.3e-06 54.7 92 33.7
MBI18_g28122_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.3e-06 54.7 214 23.8
Prupe.4G257700 Prunus persica HOM05D000034 ORTHO05D000277 9.3e-06 54.7 105 38.1
TWI34G0032 Tripterygium wilfordii HOM05D007780 ORTHO05D000140 9.3e-06 54.7 177 25.4


User provided reference genes

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