Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.0e-213 746.5 378 100.0
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.6e-190 669.5 377 88.9
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 5.9e-182 641.0 378 83.6
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.5e-174 615.1 377 80.4
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.7e-173 612.8 377 80.1
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.8e-173 611.7 377 79.6
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.8e-173 611.7 377 80.1
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.8e-170 600.9 365 84.1
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.0e-169 599.4 386 77.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 8.3e-168 594.0 376 77.4
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 8.6e-165 583.9 377 77.5
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 3.3e-164 582.0 375 75.2
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.1e-163 579.3 375 75.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 4.7e-163 578.2 377 76.4
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 5.7e-161 571.2 375 75.2
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-160 570.1 377 73.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 2.2e-160 569.3 375 74.4
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 8.3e-160 567.4 370 75.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.4e-159 566.6 375 74.1
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.8e-159 566.2 375 74.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.2e-159 565.5 375 73.9
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 7.0e-159 564.3 376 74.5
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.2e-158 563.5 375 73.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.5e-158 562.0 376 72.6
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 2.3e-157 559.3 375 72.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.3e-157 559.3 375 72.8
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 1.1e-156 557.0 377 74.5
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.3e-156 555.1 371 74.7
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 7.3e-156 554.3 428 67.1
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 9.5e-156 553.9 375 70.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.6e-155 553.1 371 73.3
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 2.1e-155 552.7 375 70.7
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 3.6e-155 552.0 375 73.6
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 6.2e-155 551.2 376 70.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 6.2e-155 551.2 375 70.7
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 6.2e-155 551.2 375 70.7
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 8.0e-155 550.8 373 72.1
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.4e-154 550.1 375 70.9
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 4.0e-154 548.5 375 70.7
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 6.8e-154 547.7 376 72.6
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 8.9e-154 547.4 379 72.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 2.0e-153 546.2 375 72.3
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 4.4e-153 545.0 379 71.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 5.8e-153 544.7 379 71.0
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 7.5e-153 544.3 375 69.1
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.7e-152 543.1 376 71.3
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.4e-151 540.0 377 70.0
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 9.2e-151 537.3 375 69.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 2.0e-150 536.2 374 70.9
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.0e-149 533.9 379 69.9
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 3.9e-149 531.9 376 69.4
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.1e-148 530.4 376 69.7
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 3.3e-148 528.9 376 69.7
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.6e-147 526.6 376 68.9
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 3.6e-147 525.4 376 68.1
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.8e-146 523.1 375 68.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.3e-146 522.7 376 69.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.5e-145 520.0 375 68.3
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 8.3e-144 514.2 375 70.1
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.1e-143 513.8 376 64.4
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 7.1e-143 511.1 376 64.4
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 2.7e-142 509.2 377 66.3
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.7e-142 509.2 373 67.0
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.7e-141 506.5 408 62.5
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.5e-140 503.4 375 64.3
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.2e-139 500.4 398 63.3
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.6e-139 500.0 378 64.3
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 3.6e-139 498.8 375 64.0
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 5.2e-138 495.0 377 63.9
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 5.2e-138 495.0 375 64.0
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 2.6e-137 492.7 376 62.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 5.8e-137 491.5 376 63.0
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 7.6e-137 491.1 375 62.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 7.6e-137 491.1 376 63.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-136 490.3 376 62.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.3e-136 490.3 376 62.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.7e-136 490.0 376 62.5
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.9e-136 488.4 375 62.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.2e-134 483.8 375 62.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.2e-134 483.8 376 64.6
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 4.6e-134 481.9 377 62.6
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 7.8e-134 481.1 375 64.0
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.7e-133 479.9 375 62.1
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 6.9e-130 468.0 375 60.5
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 1.4e-127 460.3 423 55.6
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 2.1e-126 456.4 316 69.6
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.9e-124 449.9 375 60.5
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 7.3e-124 448.0 377 59.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.8e-123 446.0 377 59.9
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 4.0e-122 442.2 375 58.7
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.1e-118 429.9 384 57.8
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.6e-115 420.2 371 55.8
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 9.0e-106 387.9 265 69.4
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.6e-102 377.1 271 66.8
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 3.3e-100 369.4 374 50.5
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 5.7e-100 368.6 375 48.0
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.3e-93 346.7 276 62.0
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.6e-91 340.5 404 47.8
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.0e-81 307.0 367 43.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.8e-77 293.9 187 74.9
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.7e-75 287.3 270 57.4
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 3.6e-70 269.6 368 40.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.5e-49 199.9 166 61.4
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 8.0e-46 188.7 219 46.1
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 8.0e-46 188.7 219 46.1
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 9.8e-44 181.8 135 67.4
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 9.8e-44 181.8 169 53.3
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 6.4e-43 179.1 139 59.0
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.6e-41 174.5 120 64.2
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 5.0e-40 169.5 122 65.6
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 8.9e-37 158.7 112 61.6
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.9e-34 151.0 115 64.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.3e-29 134.0 371 29.1
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 2.3e-29 134.0 107 65.4
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.4e-26 124.0 105 62.9
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.2e-25 121.7 353 27.5
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.8e-21 107.8 120 51.7
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.5e-15 88.2 74 64.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 1.8e-13 81.3 115 46.1
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.4e-12 77.0 118 42.4
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 5.8e-12 76.3 50 76.0
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-11 75.1 69 59.4
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.9e-11 73.9 50 64.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.9e-11 73.9 46 80.4
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.7e-09 67.4 52 63.5
Migut.F00246 Erythranthe guttata HOM05D002314 ORTHO05D002538 1.0e-08 65.5 379 26.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 5.1e-08 63.2 44 68.2
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.5e-07 61.6 63 44.4
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 5.6e-07 59.7 44 63.6
Cpa.g.c40727 Carica papaya HOM05D005972 ORTHO05D007548 5.6e-07 59.7 47 61.7
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 7.3e-07 59.3 46 60.9
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 1.3e-06 58.5 46 60.9
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.3e-06 58.5 83 47.0
QL09p011009 Quercus lobata HOM05D002314 ORTHO05D002538 1.6e-06 58.2 386 23.8


User provided reference genes

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