Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 6.6e-202 707.2 372 100.0
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.6e-179 631.3 376 89.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.0e-178 628.6 360 90.3
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.5e-166 588.2 383 83.3
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 7.6e-166 587.4 382 83.5
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.7e-165 586.3 385 82.9
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.9e-165 585.5 372 84.4
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 6.5e-165 584.3 365 83.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.3e-162 576.6 366 82.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 3.3e-161 572.0 371 81.1
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.8e-160 568.9 364 81.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 9.0e-159 563.9 363 82.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.3e-157 560.1 331 86.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 9.3e-156 553.9 363 80.2
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-155 552.7 363 81.0
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.0e-154 548.9 351 80.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-154 547.7 363 80.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.9e-153 546.2 346 85.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.3e-153 545.0 367 77.4
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.3e-153 545.0 366 77.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 4.3e-153 545.0 351 80.6
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.7e-153 544.7 367 77.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-153 544.3 360 80.6
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 2.8e-152 542.3 360 78.3
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.8e-152 542.3 351 79.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.3e-152 541.2 353 79.6
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-151 540.4 360 78.1
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-151 540.4 360 78.1
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-151 540.4 360 78.1
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.4e-151 539.3 353 79.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.1e-151 538.9 363 77.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 4.1e-151 538.5 362 77.1
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.1e-151 538.5 359 77.2
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.1e-151 538.5 371 76.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.1e-151 538.5 351 76.9
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.1e-151 538.5 351 76.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-151 538.1 386 74.9
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 6.9e-151 537.7 348 79.3
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.9e-151 537.7 327 83.2
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 9.0e-151 537.3 349 79.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 9.0e-151 537.3 366 77.3
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 9.0e-151 537.3 335 82.4
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.2e-150 537.0 380 75.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.5e-150 536.6 353 79.3
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.0e-150 536.2 317 85.8
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.6e-150 535.8 360 78.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 3.4e-150 535.4 333 81.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 4.5e-150 535.0 358 77.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.0e-149 533.9 362 76.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.8e-149 531.9 360 77.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.8e-149 531.9 372 74.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.0e-149 531.6 349 78.8
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.0e-149 531.6 349 78.8
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.0e-149 531.6 349 78.8
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.1e-148 530.4 348 78.7
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-148 530.0 331 81.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 3.2e-148 528.9 359 77.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-148 528.5 366 76.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.1e-147 526.2 338 78.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.1e-147 526.2 338 78.7
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.1e-147 526.2 351 78.1
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.1e-147 526.2 353 76.5
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.6e-147 525.0 340 78.8
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.6e-147 525.0 357 77.0
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 6.1e-147 524.6 366 75.1
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.0e-146 523.9 342 78.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.4e-146 523.5 358 75.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.9e-146 521.9 330 79.4
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 3.9e-146 521.9 350 76.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.5e-145 520.0 347 76.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 7.4e-145 517.7 347 75.8
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 9.7e-145 517.3 298 86.6
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.3e-144 516.9 355 75.2
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.2e-144 516.2 339 76.1
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 4.8e-144 515.0 283 90.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 4.8e-144 515.0 334 78.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.4e-143 513.5 366 74.0
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.4e-143 512.7 352 74.1
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.0e-142 509.6 326 79.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 3.4e-142 508.8 348 75.9
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.7e-141 506.5 311 80.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.7e-141 506.5 326 76.7
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.0e-141 505.0 299 81.3
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.1e-140 503.8 371 72.2
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.2e-140 501.9 343 73.2
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 5.5e-140 501.5 351 72.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 9.4e-140 500.7 335 76.1
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.1e-139 499.6 387 72.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.8e-138 496.5 352 72.2
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 6.7e-138 494.6 337 75.4
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 8.8e-138 494.2 323 74.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.5e-137 493.4 371 71.2
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 5.7e-137 491.5 321 76.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 9.7e-137 490.7 332 76.2
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.8e-136 488.4 363 70.8
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.4e-135 486.9 336 75.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 7.0e-135 484.6 344 73.3
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.3e-133 480.3 344 75.3
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-133 479.6 341 76.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-132 476.9 387 66.4
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-132 475.7 363 72.5
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 4.2e-132 475.3 335 76.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.5e-132 474.9 296 77.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.3e-130 469.5 344 68.9
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.6e-129 466.1 337 68.8
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 4.4e-129 465.3 324 73.5
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.8e-128 461.8 317 72.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.4e-127 459.5 308 75.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.1e-127 459.1 341 68.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 7.7e-126 454.5 299 78.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.0e-125 454.1 318 69.5
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 5.0e-125 451.8 359 70.5
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 8.5e-125 451.1 293 79.2
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.5e-124 449.5 380 65.0
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.2e-124 448.0 348 69.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 6.1e-123 444.9 263 85.6
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 6.1e-123 444.9 396 63.9
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 6.8e-122 441.4 333 67.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.0e-121 439.9 343 65.3
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.1e-119 432.2 306 74.2
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.8e-117 425.6 349 64.8
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.8e-117 425.6 349 64.8
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.5e-108 396.4 360 61.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.0e-107 391.3 294 68.7
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.0e-106 389.0 316 65.8
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.2e-106 388.7 234 83.3
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.4e-105 386.0 327 64.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 5.7e-105 385.2 268 74.3
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.3e-104 384.0 319 62.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.2e-104 383.3 241 79.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.4e-95 354.0 228 77.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.2e-89 334.3 230 73.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 6.4e-88 328.6 205 76.1
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.2e-87 324.7 242 72.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.3e-84 315.1 360 53.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.5e-76 290.0 199 75.4
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.7e-75 285.8 262 62.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.8e-67 260.0 177 76.8
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.2e-63 246.1 178 69.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.1e-63 245.4 167 78.4
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-40 171.8 139 64.7
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-40 170.6 128 68.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-38 164.5 119 70.6
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.7e-36 155.2 125 62.4
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-35 153.3 117 74.4
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.3e-32 144.8 133 63.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.0e-32 142.9 82 81.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.6e-30 136.7 118 68.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-29 132.9 145 55.2
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.5e-28 131.3 271 30.6
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.0e-28 131.0 94 68.1
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.3e-24 118.2 88 71.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.4e-23 114.8 79 82.3
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-22 111.3 86 65.1
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 3.0e-21 107.1 92 58.7
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.0e-18 95.9 58 69.0
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-17 95.1 89 52.8
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-15 88.6 73 69.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 9.4e-15 85.5 52 75.0


User provided reference genes

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