Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 0.0e+00 1174.1 614 100.0
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 7.6e-296 1020.0 617 82.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 5.6e-291 1003.8 617 81.8
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 5.1e-260 901.0 620 73.1
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.1e-257 891.3 608 73.0
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 8.5e-255 883.6 610 72.6
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.2e-254 881.7 614 71.7
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 6.1e-253 877.5 619 72.4
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.8e-252 875.9 614 75.1
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.9e-252 874.8 633 71.1
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.9e-252 874.8 633 71.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 8.8e-252 873.6 617 71.0
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.0e-251 872.5 617 74.7
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.6e-251 872.1 624 74.4
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.3e-250 869.8 617 74.1
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.8e-249 865.9 616 74.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 9.1e-249 863.6 617 73.6
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 4.5e-248 861.3 615 74.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.0e-247 860.1 634 69.1
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.8e-247 858.2 614 69.7
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-246 855.5 620 71.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.8e-244 849.4 619 69.3
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.0e-244 848.6 623 73.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 8.8e-244 847.0 616 69.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 8.8e-244 847.0 623 70.5
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 8.8e-244 847.0 617 73.3
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.6e-243 845.5 630 72.4
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.3e-242 843.2 616 69.6
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.4e-241 839.7 617 69.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-241 839.7 619 69.1
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.8e-241 839.3 616 68.5
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.0e-239 833.6 619 68.2
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.3e-239 833.2 626 67.6
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.2e-239 832.4 619 68.2
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 6.5e-239 830.9 621 66.8
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-238 829.7 618 68.8
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.8e-236 822.8 617 70.7
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.3e-234 816.6 623 69.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.3e-234 816.6 616 64.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 3.7e-234 815.1 617 71.0
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 6.3e-234 814.3 568 72.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 8.3e-234 813.9 623 70.1
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 8.3e-234 813.9 633 66.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.3e-234 813.9 620 66.9
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 3.5e-232 808.5 623 65.3
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 5.9e-232 807.7 611 69.7
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.9e-232 807.7 630 70.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.7e-231 806.2 623 68.7
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.3e-231 805.8 621 69.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 3.8e-231 805.1 626 65.7
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.5e-230 803.1 617 65.5
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.3e-230 802.0 568 71.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 9.5e-230 800.4 623 64.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 9.5e-230 800.4 626 65.5
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.2e-228 794.7 637 69.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.7e-227 791.2 615 68.8
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 9.8e-227 790.4 618 63.8
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.3e-226 790.0 603 68.5
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.7e-226 789.6 603 68.5
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.1e-225 785.0 601 68.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.2e-224 783.5 626 63.4
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.6e-224 783.1 614 64.5
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.7e-224 782.3 601 65.1
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 4.5e-224 781.6 638 66.5
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 7.8e-224 780.8 618 63.9
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.0e-223 780.4 623 64.4
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 2.3e-223 779.2 624 64.3
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.9e-223 778.9 617 63.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 6.8e-220 767.7 618 62.9
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 8.9e-220 767.3 615 62.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 9.8e-219 763.8 613 63.0
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.7e-218 761.9 618 63.1
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 4.9e-218 761.5 616 66.9
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 4.9e-218 761.5 616 62.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.9e-217 759.6 618 61.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.7e-216 755.7 619 63.7
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 5.0e-215 751.5 622 62.5
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.5e-214 750.0 620 66.5
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.1e-213 746.1 630 62.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.8e-212 743.0 620 60.5
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.3e-212 742.7 620 60.5
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.5e-211 740.0 728 56.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.1e-209 731.9 665 56.7
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.1e-207 724.9 615 64.9
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.3e-206 722.2 615 64.7
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.6e-206 721.5 628 63.5
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.8e-205 719.2 627 57.7
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.1e-204 715.7 598 62.9
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.1e-204 715.7 655 56.9
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 4.0e-204 715.3 627 60.8
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 6.6e-199 698.0 645 58.1
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.4e-196 690.3 684 55.1
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.4e-193 680.2 735 50.6
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 6.0e-192 674.9 618 57.6
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.7e-191 673.3 663 55.2
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.1e-182 644.0 514 62.5
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 6.2e-181 638.3 624 58.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 6.2e-181 638.3 582 60.5
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.4e-180 636.3 642 52.8
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.1e-180 636.0 621 58.5
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 6.4e-178 628.2 596 58.9
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.2e-177 625.9 616 55.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-175 620.5 621 53.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.9e-175 619.0 598 54.3
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.0e-167 594.3 651 53.8
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 3.4e-155 552.7 508 57.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.3e-134 483.0 432 59.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.1e-124 451.4 446 61.2
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.1e-120 437.2 324 64.8
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-118 430.3 414 56.0
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 7.5e-118 428.7 446 56.7
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-117 427.9 337 62.6
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.7e-115 420.2 413 55.9
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.7e-110 402.5 402 55.0
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.7e-109 399.8 405 51.6
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.7e-107 393.7 413 53.0
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-106 391.7 412 53.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.6e-105 386.0 414 52.9
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.9e-103 378.6 393 53.4
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-93 347.8 381 51.2
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.6e-91 341.3 207 78.7
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.6e-88 330.1 416 46.2
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.9e-84 317.8 558 33.5
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 3.9e-82 310.1 558 32.8
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.9e-78 295.4 593 34.9
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 6.2e-72 276.2 211 69.2
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.1e-64 251.1 538 30.1
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.5e-62 245.0 516 31.2
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.0e-58 232.3 258 50.4
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.5e-57 228.4 174 63.8
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.4e-52 211.8 163 66.3
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 8.2e-48 196.1 528 26.9
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.6e-46 189.5 237 46.4
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.3e-45 188.7 444 35.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.9e-38 163.3 113 71.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.4e-34 152.1 137 56.2
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 4.3e-33 147.1 109 67.0
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.7e-32 145.2 98 68.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 6.3e-32 143.3 107 66.4
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.4e-31 142.1 204 42.6
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-28 132.1 88 70.5
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 2.0e-25 121.7 86 62.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 6.3e-24 116.7 96 56.2
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 8.2e-24 116.3 305 32.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.6e-22 112.1 93 55.9
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.6e-22 112.1 163 43.6
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.5e-22 110.5 80 67.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 6.5e-21 106.7 70 65.7
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 6.5e-21 106.7 70 65.7
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 2.3e-18 98.2 69 62.3
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.2e-12 77.4 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.2e-12 77.4 44 75.0
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.1e-11 75.1 96 47.9
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.7e-11 74.7 48 70.8
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 1.8e-10 72.0 53 58.5


User provided reference genes

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