Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 9.0e-66 253.4 128 100.0
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 5.3e-58 227.6 129 90.7
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 5.3e-58 227.6 129 90.7
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.5e-57 226.1 123 91.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 7.6e-57 223.8 121 91.7
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.3e-56 223.0 127 89.0
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.9e-56 221.1 124 87.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.9e-56 221.1 124 87.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.9e-56 221.1 124 87.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 8.4e-56 220.3 128 85.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 8.4e-56 220.3 117 94.0
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.9e-55 219.2 127 87.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.5e-55 218.8 124 88.7
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 5.5e-55 217.6 123 87.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 5.5e-55 217.6 115 93.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 7.1e-55 217.2 126 85.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.2e-54 216.5 123 84.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.1e-54 215.7 123 86.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.1e-54 215.7 123 85.4
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 4.6e-54 214.5 128 83.6
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.0e-53 211.8 124 87.9
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 3.9e-53 211.5 122 85.2
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 5.1e-53 211.1 120 85.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-52 209.9 136 79.4
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-52 209.9 136 79.4
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.1e-52 209.9 123 82.1
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.5e-52 209.5 124 83.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.9e-52 209.1 123 83.7
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.3e-52 208.4 121 86.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 3.3e-52 208.4 121 83.5
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 4.3e-52 208.0 125 84.0
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.7e-52 207.6 113 89.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 7.4e-52 207.2 123 82.9
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.4e-52 207.2 150 71.3
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.4e-52 207.2 150 71.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 7.4e-52 207.2 119 84.9
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 9.6e-52 206.8 123 84.6
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.3e-51 206.5 125 83.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.4e-50 203.0 125 80.8
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.8e-50 202.6 126 81.7
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.4e-50 202.2 119 81.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.1e-50 201.8 119 84.0
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 3.1e-50 201.8 116 83.6
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.2e-49 199.9 121 83.5
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.5e-49 199.5 114 87.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.5e-49 199.5 119 86.6
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.6e-49 198.7 122 82.8
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.6e-49 198.7 120 80.8
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 3.4e-49 198.4 121 81.8
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 3.4e-49 198.4 116 87.1
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 4.5e-49 198.0 131 78.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 7.6e-49 197.2 114 86.8
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 7.6e-49 197.2 123 76.4
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 7.6e-49 197.2 124 83.1
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.3e-48 196.4 113 84.1
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.9e-48 195.3 114 85.1
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 3.8e-48 194.9 114 85.1
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 8.4e-48 193.7 133 78.2
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.5e-47 192.2 119 79.8
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 7.1e-47 190.7 126 75.4
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 9.3e-47 190.3 116 81.0
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-46 189.9 119 80.7
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.1e-46 189.1 111 82.9
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 2.7e-46 188.7 124 78.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.5e-46 188.3 111 85.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 6.1e-46 187.6 135 74.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 7.9e-46 187.2 119 79.8
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.3e-45 185.7 111 84.7
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 3.0e-45 185.3 130 73.1
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.0e-45 185.3 119 81.5
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 8.7e-45 183.7 118 81.4
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 8.7e-45 183.7 122 76.2
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.1e-44 183.3 114 80.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.5e-44 182.2 124 75.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 2.5e-44 182.2 114 78.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.7e-44 181.0 125 76.8
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.8e-43 177.9 117 80.3
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 4.8e-43 177.9 117 74.4
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.8e-43 177.9 156 61.5
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 8.2e-43 177.2 122 72.1
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.1e-42 174.9 117 79.5
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.1e-42 174.9 121 74.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 5.3e-42 174.5 115 74.8
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 6.9e-42 174.1 123 76.4
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 9.0e-42 173.7 121 73.6
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.0e-41 172.6 121 72.7
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 5.0e-40 167.9 137 66.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.1e-39 166.8 177 53.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.4e-39 166.4 129 67.4
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.4e-39 166.4 107 76.6
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.2e-39 165.2 126 63.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 3.2e-39 165.2 114 70.2
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.2e-39 164.1 113 77.9
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.6e-38 161.8 114 70.2
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 3.6e-38 161.8 117 70.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 4.6e-38 161.4 113 69.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.5e-36 155.6 116 65.5
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.3e-36 154.8 159 57.2
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 9.7e-36 153.7 118 66.1
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-34 150.2 130 67.7
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 4.1e-34 148.3 122 64.8
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.3e-34 147.9 123 61.8
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.2e-33 146.7 112 70.5
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.6e-33 145.6 113 65.5
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 3.4e-33 145.2 126 57.9
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 4.5e-33 144.8 112 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 5.9e-33 144.4 126 61.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.9e-33 144.4 133 59.4
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.7e-32 142.9 88 76.1
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-31 140.2 98 74.5
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.9e-31 139.4 86 74.4
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 7.2e-31 137.5 131 58.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 9.4e-31 137.1 83 78.3
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.6e-30 136.3 119 62.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.6e-30 136.3 131 58.0
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 7.9e-30 134.0 68 92.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 3.9e-29 131.7 107 62.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 7.4e-28 127.5 119 58.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.1e-26 123.6 177 42.9
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.1e-26 123.6 67 88.1
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.1e-26 123.6 82 72.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 5.0e-24 114.8 68 75.0
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.6e-22 109.8 109 57.8
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-20 102.8 83 65.1
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.7e-16 89.7 62 71.0
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 5.5e-15 84.7 83 60.2
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.0e-13 80.5 66 56.1
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 6.8e-13 77.8 49 75.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 6.3e-11 71.2 48 68.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.1e-10 68.9 66 57.6
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 7.0e-10 67.8 59 66.1
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 9.4e-07 57.4 59 52.5


User provided reference genes

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