Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.1e-72 277.7 329 100.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.5e-67 260.0 329 97.6
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 9.4e-67 258.1 332 96.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.1e-66 256.9 330 96.7
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.9e-65 252.7 329 96.7
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.1e-65 252.3 329 96.4
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.0e-60 238.0 327 94.5
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.9e-60 236.5 327 94.5
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-59 234.6 332 91.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.2e-59 233.0 321 94.7
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.2e-59 232.6 327 91.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.2e-59 232.6 329 91.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.2e-59 232.6 329 91.5
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.2e-59 231.9 325 92.9
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.6e-58 230.7 328 93.6
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.7e-58 229.9 322 93.5
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.7e-58 229.2 323 94.1
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 325 92.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.0e-58 228.4 323 93.5
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.0e-58 228.4 323 93.5
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.0e-57 228.0 327 92.0
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.4e-57 227.6 329 91.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.4e-57 227.6 323 93.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.4e-57 227.6 323 93.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.9e-57 226.1 325 92.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.2e-57 225.7 327 91.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 5.2e-57 225.7 325 92.9
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 8.8e-57 224.9 322 93.8
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 8.8e-57 224.9 331 92.1
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-56 224.6 324 92.6
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 91.7
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 91.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.5e-56 224.2 324 90.7
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.0e-56 223.8 323 92.9
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.6e-56 223.4 325 91.7
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 2.6e-56 223.4 325 91.7
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.3e-56 223.0 324 91.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.4e-56 222.6 325 91.4
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.7e-56 222.2 325 91.4
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 325 91.1
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 328 91.5
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 9.7e-56 221.5 325 90.8
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 9.7e-56 221.5 329 90.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.3e-55 221.1 319 90.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.3e-55 221.1 325 91.4
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.7e-55 220.7 325 91.7
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.2e-55 220.3 325 92.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 327 90.8
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.8e-55 219.9 331 82.5
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.8e-55 219.9 321 88.5
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 3.7e-55 219.5 329 91.2
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.7e-55 219.5 324 89.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.7e-55 219.5 330 90.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-55 219.2 329 88.4
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 320 91.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 321 89.7
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 8.2e-55 218.4 324 92.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 8.2e-55 218.4 369 69.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.1e-54 218.0 329 90.3
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.1e-54 218.0 325 91.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.4e-54 216.9 327 90.8
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 3.1e-54 216.5 320 91.9
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 307 94.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.1e-54 216.5 324 88.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 321 89.7
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 325 88.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.1e-54 216.1 325 89.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 88.5
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 7.0e-54 215.3 328 89.9
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 7.0e-54 215.3 330 91.8
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.1e-54 214.9 324 87.7
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-53 214.5 331 90.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.6e-53 214.2 332 89.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.5e-53 213.0 297 96.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.9e-53 212.2 321 78.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 7.7e-53 211.8 337 62.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.7e-53 211.8 309 93.5
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 340 80.6
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.3e-52 211.1 333 88.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.7e-52 210.7 333 88.9
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.2e-52 210.3 330 90.0
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.2e-52 210.3 329 90.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.2e-52 210.3 320 90.0
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.9e-52 209.9 323 90.4
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 309 92.2
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.1e-51 208.0 327 86.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.5e-51 207.6 321 89.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.5e-51 206.8 333 88.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.4e-51 204.9 350 66.9
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.1e-50 203.8 321 89.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.7e-50 203.4 323 88.5
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-50 203.4 347 78.4
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.6e-50 203.0 323 89.2
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.6e-50 203.0 330 88.8
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.6e-50 203.0 245 91.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 4.7e-50 202.6 329 88.4
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 4.7e-50 202.6 296 92.9
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.1e-50 202.2 321 89.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 6.1e-50 202.2 329 88.4
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 6.1e-50 202.2 329 88.4
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 329 88.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.3e-49 200.3 329 88.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.0e-49 199.9 307 91.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.0e-49 199.9 329 88.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.0e-49 199.9 242 89.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.0e-49 199.9 323 88.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.2e-49 199.1 333 87.7
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 6.7e-49 198.7 318 89.3
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.5e-48 197.6 245 89.4
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 3.3e-48 196.4 318 89.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.4e-48 196.1 326 85.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 7.5e-48 195.3 332 75.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.2e-47 193.7 311 90.0
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.2e-47 193.7 353 84.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 8.2e-47 191.8 345 72.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-46 191.4 327 80.7
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-46 191.4 327 80.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 353 77.1
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.0e-46 188.7 105 91.4
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.0e-46 188.7 325 84.6
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.0e-46 188.7 325 84.6
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.0e-46 188.7 323 84.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.2e-45 188.0 337 71.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 7.7e-45 185.3 307 89.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 5.0e-44 182.6 319 88.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 5.0e-44 182.6 333 84.1
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.5e-44 182.2 335 70.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.5e-43 180.3 243 70.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 5.5e-43 179.1 238 89.5
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 7.2e-43 178.7 322 85.1
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.2e-42 177.9 331 85.5
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.6e-42 177.6 329 82.1
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 6.1e-42 175.6 107 87.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.0e-41 174.9 331 85.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.4e-41 174.5 341 81.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.3e-41 173.7 327 82.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 4.0e-41 172.9 329 80.9
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.2e-41 172.6 335 71.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 6.8e-41 172.2 316 87.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.8e-41 172.2 222 93.7
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.2e-40 171.4 329 82.7
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.7e-40 169.1 327 84.7
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.8e-39 166.8 105 81.9
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-39 166.8 81 95.1
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.7e-39 166.4 105 81.9
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.8e-39 166.0 99 84.8
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.8e-39 166.0 99 84.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.1e-38 164.9 330 52.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-38 163.3 98 83.7
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-38 163.3 98 83.7
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.0e-37 160.6 94 81.9
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.6e-36 155.6 93 80.6
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-35 154.8 253 79.4
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.9e-35 154.1 105 75.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.0e-32 144.1 250 78.0
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.4e-30 137.9 73 86.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.9e-29 132.5 102 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 2.3e-28 130.6 320 77.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.6e-28 129.0 276 82.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.5e-27 127.1 304 78.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.3e-25 120.6 82 76.8
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.0e-20 102.8 65 76.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-19 101.3 73 68.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.3e-19 99.8 118 93.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.6e-18 96.7 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 64 64.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-17 93.6 258 87.6
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.0e-16 90.9 118 55.1
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 3.4e-16 90.1 245 72.2
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.4e-16 89.7 64 62.5
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.6e-13 81.3 77 53.2
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-12 77.8 59 66.1
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.1e-11 75.1 41 87.8
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.1e-10 70.9 41 85.4
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.8e-09 67.8 41 82.9
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.0e-09 66.6 34 94.1
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 3.4e-08 63.5 34 88.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-08 63.2 40 75.0


User provided reference genes

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