Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.8e-143 511.9 257 100.0
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.5e-108 394.4 243 81.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.4e-102 375.9 243 79.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.4e-102 374.8 243 79.0
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.5e-101 371.7 265 77.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.3e-99 364.4 243 77.8
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.2e-93 347.1 243 75.7
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.6e-90 335.5 223 78.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.2e-85 320.5 224 73.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.3e-84 317.0 224 73.7
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.7e-82 308.5 242 66.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.7e-79 298.9 245 66.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.9e-79 298.5 206 73.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.0e-77 291.6 203 72.9
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 7.8e-77 291.2 248 61.7
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 5.1e-76 288.5 244 62.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 5.1e-76 288.5 248 64.1
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.5e-75 287.0 200 70.5
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 9.5e-75 284.3 245 64.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.8e-74 282.7 195 69.7
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.6e-74 282.3 203 69.5
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.6e-74 282.3 243 60.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.7e-74 282.0 203 69.5
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 8.1e-74 281.2 194 72.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.4e-73 280.4 235 62.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.8e-73 280.0 196 70.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.3e-73 279.6 223 65.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 8.9e-73 277.7 248 60.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.5e-72 276.9 206 68.0
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.4e-72 275.4 222 62.6
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 4.4e-72 275.4 235 58.7
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 9.9e-72 274.2 236 60.6
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.3e-71 273.9 226 65.0
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.2e-71 273.1 236 60.2
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.8e-71 272.3 230 63.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.7e-69 266.2 196 66.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.5e-69 265.8 223 62.8
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.5e-69 265.8 246 58.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.0e-68 264.2 237 59.1
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.3e-68 263.1 227 62.6
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.3e-68 263.1 201 65.7
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.0e-68 262.7 202 64.9
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.9e-68 262.3 228 61.4
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.9e-68 262.3 237 58.2
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 6.6e-68 261.5 196 67.3
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.5e-67 259.6 229 60.3
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 9.6e-67 257.7 250 55.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.2e-66 257.3 201 63.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.1e-66 256.5 193 63.2
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.8e-66 256.1 237 57.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.7e-66 255.4 226 59.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 6.2e-66 255.0 196 65.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.8e-65 253.4 226 59.3
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.4e-65 253.1 277 52.0
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.1e-65 252.7 294 49.3
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 5.2e-65 251.9 277 51.6
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 5.2e-65 251.9 211 62.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 5.2e-65 251.9 201 62.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.5e-64 250.4 195 63.6
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.0e-64 250.0 196 63.8
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 5.8e-64 248.4 243 55.6
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 7.6e-64 248.1 181 65.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.7e-63 246.9 195 64.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 4.9e-63 245.4 201 60.7
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 8.4e-63 244.6 267 51.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.9e-62 243.4 194 63.9
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.2e-62 242.7 196 60.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.2e-62 242.3 246 54.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.2e-62 242.3 156 73.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 5.4e-62 241.9 204 58.3
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 7.1e-62 241.5 237 55.3
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.5e-61 239.2 156 71.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.5e-61 239.2 316 46.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.0e-61 238.4 249 52.6
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.0e-60 237.7 157 73.2
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.0e-60 237.7 230 55.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.0e-60 237.7 156 70.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.6e-60 235.0 157 69.4
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 6.6e-60 235.0 244 52.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.3e-59 231.5 195 60.0
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 9.6e-59 231.1 157 70.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.6e-58 230.3 250 52.4
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.8e-58 229.6 230 53.9
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.4e-57 227.3 204 57.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-57 227.3 235 51.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-57 226.9 232 54.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-57 226.9 264 51.1
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.4e-57 226.5 197 58.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 3.1e-57 226.1 242 48.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 5.3e-57 225.3 239 52.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.0e-57 224.6 247 51.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 9.0e-57 224.6 153 70.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.2e-56 224.2 194 56.7
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 5.8e-56 221.9 194 59.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-55 220.7 221 53.8
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.3e-55 220.7 221 53.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-55 220.3 212 55.7
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-55 219.9 205 55.6
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-55 219.9 221 53.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.2e-55 219.9 171 66.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 3.8e-55 219.2 195 55.9
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 3.8e-55 219.2 195 55.9
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.8e-55 219.2 197 55.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 4.9e-55 218.8 236 50.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.9e-55 218.8 198 53.5
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-55 218.4 197 55.3
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-55 218.4 195 55.9
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-55 218.4 195 55.9
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 8.4e-55 218.0 218 52.3
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 8.4e-55 218.0 218 52.3
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-54 217.6 195 55.4
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-54 217.2 205 55.1
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-54 216.5 195 55.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.2e-54 215.7 243 50.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 9.3e-54 214.5 205 52.7
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.6e-53 212.2 161 61.5
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 7.9e-53 211.5 226 50.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 5.1e-52 208.8 198 54.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 8.7e-52 208.0 194 56.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-51 207.2 152 67.1
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 4.3e-51 205.7 252 47.2
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 5.6e-51 205.3 157 63.1
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 6.2e-50 201.8 303 42.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 6.9e-49 198.4 214 50.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 9.0e-49 198.0 170 62.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.5e-48 197.2 192 53.6
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.4e-48 196.1 174 54.6
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 3.2e-46 189.5 200 52.0
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.1e-46 188.3 136 66.2
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.9e-44 182.6 133 67.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 8.7e-44 181.4 132 68.9
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.3e-43 179.5 151 62.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.1e-42 176.8 151 61.6
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.7e-42 176.0 139 65.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.7e-42 176.0 139 64.7
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 4.8e-42 175.6 139 64.7
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.2e-42 175.3 142 64.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 8.2e-42 174.9 139 65.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.1e-41 174.5 139 64.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.8e-41 173.7 139 64.0
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-41 171.8 169 51.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.5e-40 170.6 151 58.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.9e-38 163.7 147 57.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 9.3e-38 161.4 129 65.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.3e-36 157.5 167 46.7
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.2e-34 148.3 144 56.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.4e-33 146.7 178 46.1
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.3e-23 114.4 107 54.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.2e-21 107.8 178 37.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 2.1e-21 107.1 89 55.1
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 6.1e-21 105.5 187 38.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.0e-20 104.8 77 64.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.8e-20 104.0 145 44.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 3.9e-20 102.8 83 57.8
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.7e-19 99.0 89 56.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.8e-18 95.9 149 41.6
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 4.1e-17 92.8 231 34.6
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.3e-17 92.4 60 73.3
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.2e-16 91.3 210 32.4
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.2e-16 91.3 61 72.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.5e-16 90.9 231 34.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.6e-16 90.1 85 57.6
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-15 87.0 55 74.5
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-15 85.9 53 73.6
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.7e-10 69.7 110 43.6
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.5e-08 63.2 74 52.7
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 7.7e-08 62.0 110 39.1
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 1.0e-07 61.6 62 46.8
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 2.9e-07 60.1 115 37.4
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 6.5e-07 58.9 121 37.2
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 8.5e-07 58.5 134 32.1
Hma1.2p1_1598F.1_g293000 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 8.5e-07 58.5 113 32.7
Hma1.2p1_1598F.1_g292983 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 1.1e-06 58.2 113 32.7
Hma1.2p1_1598F.1_g293009 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 1.1e-06 58.2 113 32.7
Nitab4.5_0011832g0010 Nicotiana tabacum HOM05D001535 ORTHO05D003710 1.1e-06 58.2 157 30.6
Hma1.2p1_1598F.1_g293016 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 1.5e-06 57.8 113 32.7
SalBow1G2146 Salvia bowleyana HOM05D001535 ORTHO05D003710 2.5e-06 57.0 113 33.6
HPP92_021077 Vanilla planifolia HOM05D001535 ORTHO05D003710 5.5e-06 55.8 108 35.2
SGA_v2.0_scaffold32G13309 Striga asiatica HOM05D001535 ORTHO05D003710 7.2e-06 55.5 122 32.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 9.4e-06 55.1 31 90.3
MCO11G703 Micromonas commoda HOM05D001535 ORTHO05D004010 9.4e-06 55.1 168 28.0
Zm00001eb002850 Zea mays HOM05D001535 ORTHO05D003710 9.4e-06 55.1 169 29.0


User provided reference genes

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