Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.7e-46 188.3 98 100.0
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 5.5e-23 110.9 98 67.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.1e-20 103.2 98 62.2
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.1e-18 95.1 98 59.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.6e-17 92.8 98 57.1
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.5e-17 91.7 96 52.1
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.7e-17 90.5 98 55.1
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.3e-16 89.7 98 55.1
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.7e-16 89.4 96 55.2
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.9e-16 88.6 98 56.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.9e-16 88.6 91 60.4
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.0e-16 87.8 98 54.1
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 6.5e-16 87.4 98 55.1
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 6.5e-16 87.4 99 57.6
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 8.5e-16 87.0 96 55.2
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.1e-15 86.7 98 54.1
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-14 83.2 96 53.1
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-14 83.2 96 53.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 8.0e-14 80.5 91 54.9
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.8e-13 79.3 98 51.0
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.3e-13 79.0 96 50.0
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 4.0e-13 78.2 98 48.0
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 4.0e-13 78.2 89 52.8
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 5.2e-13 77.8 98 51.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 5.2e-13 77.8 91 51.6
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 8.8e-13 77.0 98 51.0
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 8.8e-13 77.0 98 50.0
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-12 76.6 98 50.0
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-12 76.6 98 50.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 4.4e-12 74.7 96 49.0
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-11 72.8 98 52.0
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.7e-11 72.8 98 52.0
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.2e-11 72.4 87 50.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.2e-11 72.4 98 50.0
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 4.8e-11 71.2 99 50.5
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 4.8e-11 71.2 96 44.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 6.3e-11 70.9 98 45.9
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.3e-11 70.9 98 51.0
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 6.3e-11 70.9 92 47.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.4e-10 68.9 96 46.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 2.4e-10 68.9 107 47.7
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 3.1e-10 68.6 98 50.0
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.1e-10 68.2 95 49.5
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 5.4e-10 67.8 80 51.2
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 7.0e-10 67.4 96 44.8
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 7.0e-10 67.4 101 50.5
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 9.1e-10 67.0 94 50.0
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 9.1e-10 67.0 80 51.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.7e-09 65.5 99 47.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.5e-09 64.7 88 45.5
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.9e-09 64.3 87 47.1
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 5.9e-09 64.3 110 42.7
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.9e-09 64.3 98 49.0
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 5.9e-09 64.3 98 43.9
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.0e-08 63.5 98 48.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.0e-08 63.5 87 46.0
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.3e-08 63.2 99 47.5
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.3e-08 63.2 94 40.4
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.7e-08 62.8 81 53.1
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 2.2e-08 62.4 98 40.8
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.8e-08 61.6 102 43.1
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 5.0e-08 61.2 88 44.3
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 6.5e-08 60.8 89 46.1
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.5e-08 60.8 99 46.5
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 8.5e-08 60.5 91 47.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 8.5e-08 60.5 98 42.9
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.1e-07 60.1 96 42.7
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.9e-07 59.3 100 47.0
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 4.2e-07 58.2 73 52.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.2e-07 58.2 87 44.8
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.2e-07 57.4 89 43.8
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 7.2e-07 57.4 87 44.8
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.2e-07 57.4 98 44.9
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 9.4e-07 57.0 92 48.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.2e-06 56.6 96 41.7
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 1.2e-06 56.6 90 43.3
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 1.6e-06 56.2 102 43.1
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.6e-06 56.2 96 40.6
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 2.7e-06 55.5 88 42.0
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.7e-06 55.5 95 42.1
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.7e-06 54.7 100 43.0
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 4.7e-06 54.7 112 39.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 6.1e-06 54.3 91 45.1
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 6.1e-06 54.3 78 43.6
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 8.0e-06 53.9 94 39.4


User provided reference genes

Program Settings