Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.3e-157 559.7 288 100.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.6e-133 477.2 259 93.4
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.2e-131 473.4 284 85.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.7e-131 471.5 286 83.9
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.1e-131 470.7 289 83.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.6e-126 454.9 299 79.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.3e-125 452.6 287 80.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 6.6e-125 451.1 292 79.5
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.4e-122 443.4 290 77.2
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.0e-122 441.8 288 76.7
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 5.2e-122 441.4 289 76.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.8e-122 441.0 288 76.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-121 439.1 273 82.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.4e-121 438.7 288 76.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.4e-121 438.7 273 82.1
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 5.8e-121 438.0 286 76.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.4e-119 433.3 282 77.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 9.2e-119 430.6 289 75.4
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 9.2e-119 430.6 288 72.9
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.1e-118 429.5 279 81.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 6.0e-118 427.9 289 74.4
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.0e-118 427.9 289 75.1
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.0e-117 427.2 287 73.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.0e-117 425.6 289 74.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 8.6e-117 424.1 288 74.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 4.3e-116 421.8 288 73.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.6e-116 421.4 289 74.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.6e-115 419.9 282 75.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.8e-115 419.1 282 74.1
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.6e-115 418.7 288 72.6
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 6.2e-115 417.9 288 72.2
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 8.1e-115 417.5 288 72.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.4e-114 416.8 288 72.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.0e-114 415.2 288 71.9
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.0e-113 412.9 288 75.0
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.0e-113 412.9 288 72.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 2.6e-113 412.5 288 71.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.6e-113 412.5 282 72.7
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 7.6e-113 411.0 288 73.3
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 9.9e-113 410.6 288 71.9
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.9e-112 409.1 282 72.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 6.4e-112 407.9 287 73.9
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 8.4e-112 407.5 282 72.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-111 407.1 281 71.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-111 407.1 287 71.1
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.4e-111 406.8 289 70.9
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.2e-111 405.6 290 72.4
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.4e-111 404.8 283 71.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.7e-110 402.5 282 69.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.3e-109 400.2 289 69.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.7e-109 399.8 293 71.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.0e-109 399.1 288 72.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.7e-109 397.5 281 71.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 8.7e-109 397.5 282 70.9
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.5e-108 396.7 284 71.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-108 396.7 292 70.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.9e-108 396.4 282 69.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.9e-108 396.4 294 70.4
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 9.6e-108 394.0 282 69.9
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.6e-107 393.3 244 81.6
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.6e-107 393.3 283 70.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 4.8e-107 391.7 289 70.2
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 8.1e-107 391.0 285 68.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 4.0e-106 388.7 282 70.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.4e-105 385.6 280 70.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 4.4e-105 385.2 285 71.6
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 4.4e-105 385.2 285 71.6
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 4.4e-105 385.2 285 71.6
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.3e-104 383.6 276 73.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-104 382.9 292 68.2
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.8e-104 382.1 323 63.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.1e-103 380.6 283 67.5
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.4e-103 380.2 285 69.1
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 276 72.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.4e-103 379.4 294 68.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.2e-103 378.6 285 70.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.2e-103 378.6 285 70.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.2e-103 378.6 285 70.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.4e-103 378.3 292 68.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.6e-102 376.7 291 67.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 3.5e-102 375.6 285 70.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.6e-102 375.2 282 68.1
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.0e-102 374.8 276 71.0
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.0e-101 374.0 276 70.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.7e-101 373.2 277 70.8
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.7e-101 373.2 278 71.2
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.3e-101 372.9 276 71.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.3e-101 372.9 292 66.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.0e-101 372.5 281 68.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.0e-101 372.5 294 65.3
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 5.1e-101 371.7 291 66.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 8.7e-101 370.9 276 71.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.1e-100 370.5 276 70.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.1e-100 370.5 229 78.6
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 9.6e-100 367.5 265 70.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.3e-99 367.1 230 80.0
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.6e-99 365.5 295 65.4
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.6e-99 365.5 229 79.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.6e-99 365.5 287 65.5
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 6.2e-99 364.8 229 77.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.4e-98 362.8 278 69.8
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 8.4e-96 354.4 278 67.6
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.1e-95 354.0 245 75.1
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.2e-95 352.4 292 63.7
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.6e-94 348.6 216 78.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 286 64.0
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 3.9e-93 345.5 283 65.4
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.8e-91 339.3 238 72.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.0e-89 333.2 243 69.5
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.0e-88 330.9 252 67.9
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.3e-88 330.5 218 76.1
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.2e-86 323.9 295 59.3
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.0e-85 320.9 276 61.2
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.3e-85 320.5 229 69.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.2e-80 303.1 229 66.4
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 5.0e-80 302.0 227 66.5
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 8.5e-80 301.2 229 65.9
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.9e-78 294.7 245 62.4
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.8e-77 293.5 289 53.6
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.4e-74 283.9 237 60.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.9e-74 281.6 289 50.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 3.0e-69 266.2 271 53.9
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.7e-61 238.4 213 62.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.3e-59 234.2 265 52.1
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.8e-59 233.0 156 73.1
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.5e-57 225.7 197 52.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.9e-56 223.0 139 77.7
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.8e-56 222.6 197 52.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.0e-56 222.2 197 51.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-55 221.1 197 51.8
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-53 214.2 214 58.9
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-52 209.9 227 55.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.8e-50 203.8 137 74.5
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.4e-50 203.4 259 49.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 197 47.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-43 180.6 171 57.9
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-41 172.2 186 50.0
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 5.7e-36 155.6 84 91.7
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.1e-34 149.8 119 65.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-28 130.6 182 38.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.4e-28 129.8 190 40.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 7.5e-28 128.6 77 80.5
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-27 127.9 206 42.7
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.3e-27 125.2 215 42.8
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-26 124.0 199 34.7
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-25 120.2 99 64.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-25 120.2 99 64.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 9.5e-23 111.7 217 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.2e-19 100.5 59 81.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 58 75.9
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.5e-17 93.2 91 52.7
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.0e-17 92.4 57 75.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 58 74.1
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-14 84.0 64 67.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.9e-13 78.6 54 70.4
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.4e-12 76.6 51 70.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 6.0e-09 65.9 90 44.4
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.9e-07 60.8 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.9e-07 60.8 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 7.3e-07 58.9 63 49.2
HanXRQChr13g0418021 Helianthus annuus HOM05D055070 ORTHO05D005871 8.1e-06 55.5 82 43.9


User provided reference genes

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