Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.1e-109 399.1 203 100.0
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.5e-102 376.3 203 92.1
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 7.2e-102 374.0 203 92.6
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.2e-94 348.2 200 85.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.0e-92 343.6 203 83.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.6e-91 339.0 200 82.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.7e-91 337.8 200 83.0
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.3e-90 336.7 200 82.5
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.7e-90 336.3 203 83.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.2e-90 335.9 200 81.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 8.3e-90 334.0 203 80.8
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.8e-89 332.8 200 81.0
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.4e-89 331.3 200 81.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.7e-88 328.9 202 81.7
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 3.5e-88 328.6 203 79.8
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 4.6e-88 328.2 203 79.8
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 7.8e-88 327.4 201 79.6
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.0e-87 327.0 203 80.8
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-87 325.9 200 81.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 3.9e-87 325.1 202 80.2
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.0e-87 324.7 203 80.3
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 6.6e-87 324.3 203 79.3
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.6e-87 324.3 198 76.8
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-86 323.6 198 76.8
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-86 323.2 202 80.2
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.9e-86 322.8 203 77.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-86 322.4 200 79.0
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 2.5e-86 322.4 203 78.3
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.3e-86 322.0 198 76.3
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.6e-86 321.2 201 80.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.3e-86 320.9 202 79.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.1e-85 319.3 200 78.0
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 6.1e-85 317.8 202 77.2
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.4e-84 316.6 198 77.8
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.8e-84 316.2 198 77.3
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 3.1e-84 315.5 203 77.8
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 5.2e-84 314.7 201 78.1
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.2e-84 314.7 203 76.4
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 6.8e-84 314.3 202 74.8
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 6.8e-84 314.3 202 74.8
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 4.4e-83 311.6 200 78.0
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.3e-82 310.1 200 76.0
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.7e-82 309.7 203 76.8
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.2e-82 309.3 202 76.2
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 6.4e-82 307.8 198 77.3
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 8.3e-82 307.4 200 79.0
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.9e-81 306.2 200 73.5
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.9e-81 306.2 202 72.8
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 4.1e-81 305.1 198 76.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 5.4e-81 304.7 192 77.1
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 5.4e-81 304.7 202 73.8
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 5.4e-81 304.7 198 75.8
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 9.2e-81 303.9 200 76.0
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.0e-80 302.8 203 73.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 2.7e-80 302.4 198 75.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 73.9
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.5e-80 302.0 199 76.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 4.6e-80 301.6 202 73.8
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 6.0e-80 301.2 202 74.3
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 6.0e-80 301.2 202 74.3
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 7.8e-80 300.8 203 73.4
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 74.7
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.3e-79 300.1 203 73.4
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.3e-79 300.1 200 75.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.3e-79 300.1 199 74.9
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.7e-79 299.7 203 73.9
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.0e-79 298.9 203 72.4
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 3.0e-79 298.9 202 73.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 3.0e-79 298.9 198 75.3
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.9e-79 298.5 203 71.9
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 5.0e-79 298.1 202 73.3
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.6e-79 297.7 200 71.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 6.6e-79 297.7 197 74.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 6.6e-79 297.7 204 77.0
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.6e-79 297.4 210 72.4
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 8.6e-79 297.4 203 72.4
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.6e-79 297.4 198 73.7
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.5e-78 296.6 201 72.6
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 71.4
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 71.4
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 71.4
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 71.4
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.9e-78 296.2 203 72.9
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 7.3e-78 294.3 203 70.9
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.6e-77 293.1 201 71.6
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.6e-77 293.1 200 72.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.8e-77 292.4 203 72.4
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 6.2e-77 291.2 200 72.0
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 6.2e-77 291.2 200 72.5
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 198 73.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.3e-76 289.3 181 78.5
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.0e-76 288.5 206 70.4
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 6.8e-76 287.7 197 70.1
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 2.0e-75 286.2 197 71.1
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.6e-75 285.8 182 78.0
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 3.4e-75 285.4 198 73.7
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 9.8e-75 283.9 202 70.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.3e-74 283.5 198 71.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.2e-72 276.9 195 69.7
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-72 276.6 200 71.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 6.0e-72 274.6 333 50.2
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 6.0e-72 274.6 200 68.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 7.8e-72 274.2 177 76.3
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 68.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 5.1e-71 271.6 178 74.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.5e-70 270.0 205 68.8
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 7.3e-70 267.7 199 67.8
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 9.5e-70 267.3 184 72.3
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.7e-69 265.0 198 66.7
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.2e-69 264.6 205 69.8
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.0e-68 261.9 177 72.9
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 6.8e-68 261.2 190 67.9
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.2e-67 260.4 181 71.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.2e-67 260.4 185 69.2
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.4e-66 254.2 235 61.3
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 8.4e-66 254.2 167 78.4
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 9.2e-65 250.8 252 56.7
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 1.2e-64 250.4 193 62.7
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.3e-63 246.1 222 59.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.6e-61 240.0 242 55.8
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-60 237.3 213 59.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.9e-54 216.5 167 67.7
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.5e-54 216.1 200 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.8e-53 211.8 190 55.8
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.1e-52 209.1 225 54.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.3e-47 193.0 112 84.8
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.9e-47 192.2 128 75.0
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 5.1e-47 191.8 112 83.9
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.1e-44 184.1 112 77.7
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 2.4e-44 183.0 192 50.5
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.0e-43 179.9 120 73.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.3e-42 177.2 201 47.8
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.1e-40 169.9 116 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.9e-40 167.9 177 49.2
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.8e-37 158.7 144 53.5
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-32 142.9 103 69.9
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.9e-32 141.4 94 68.1
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.3e-31 140.6 206 39.3
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 3.9e-31 139.0 85 76.5
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.7e-31 137.9 83 79.5
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.5e-30 136.3 83 78.3
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 3.7e-29 132.5 90 74.4
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-28 131.0 84 73.8
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.5e-27 127.1 207 39.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.9e-27 125.2 129 58.9
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-24 117.5 130 48.5
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.5e-24 115.9 72 73.6
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.9e-23 112.5 101 60.4
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.7e-23 111.3 68 79.4
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-22 110.9 77 71.4
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 9.7e-22 107.8 72 75.0
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.5e-19 100.5 122 50.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.0e-18 97.8 195 32.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.7e-18 97.1 70 64.3
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 3.2e-17 92.8 75 61.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.2e-16 90.9 193 32.1
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 2.7e-16 89.7 105 48.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.9e-16 88.2 115 47.0
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.3e-13 80.9 49 71.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.6e-11 73.2 45 75.6
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 5.0e-10 68.9 47 68.1
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 5.5e-09 65.5 42 71.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 9.4e-09 64.7 50 62.0
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 2.3e-07 60.1 36 75.0
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 8.8e-07 58.2 70 41.4
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.1e-06 57.8 42 69.0
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.5e-06 57.4 40 60.0


User provided reference genes

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