Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.8e-94 349.4 194 100.0
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 9.8e-40 167.5 197 61.9
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.1e-38 164.1 216 54.2
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-38 163.7 189 61.4
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.2e-38 162.5 193 61.1
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 7.0e-38 161.4 189 59.3
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 2.7e-37 159.5 191 55.0
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.3e-36 157.1 200 54.0
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 6.6e-36 154.8 199 55.8
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.5e-35 152.9 189 56.1
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 7.3e-35 151.4 187 51.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 7.3e-35 151.4 192 54.2
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.6e-34 149.1 189 60.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.2e-34 148.3 198 51.5
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.3e-33 146.4 199 51.8
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-32 144.1 201 57.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.8e-32 141.7 213 50.7
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.8e-32 141.7 213 50.7
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.8e-32 141.0 188 58.5
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.8e-32 141.0 199 50.8
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.7e-31 140.2 194 51.5
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 2.2e-31 139.8 201 54.7
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.9e-31 138.7 190 50.5
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.3e-31 137.9 212 48.6
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.2e-30 136.0 195 55.4
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 4.1e-30 135.6 193 49.7
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.6e-29 133.7 216 45.8
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.7e-29 132.9 189 47.6
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.1e-27 127.5 199 51.8
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.5e-27 127.1 201 53.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 2.1e-26 123.2 197 49.7
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.1e-25 120.9 192 47.9
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.1e-25 120.9 190 44.2
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.8e-25 118.2 183 50.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 3.4e-24 115.9 191 44.0
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 9.9e-24 114.4 204 42.6
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.7e-23 113.6 160 52.5
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.8e-23 112.5 199 49.2
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 6.4e-23 111.7 200 41.5
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.9e-22 110.2 208 42.8
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.0e-20 104.4 205 44.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.3e-20 104.0 198 44.4
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.7e-20 103.6 193 40.9
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 3.0e-20 102.8 208 39.9
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 3.0e-20 102.8 205 40.5
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 3.0e-20 102.8 205 40.5
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.0e-20 102.8 189 46.6
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.9e-20 102.4 203 42.4
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.6e-20 101.7 190 42.6
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.9e-19 100.1 202 42.6
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 2.5e-19 99.8 205 40.5
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 3.3e-19 99.4 208 38.5
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 3.3e-19 99.4 208 38.5
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 3.3e-19 99.4 208 38.5
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 4.3e-19 99.0 193 42.0
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 5.6e-19 98.6 207 40.6
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 7.3e-19 98.2 199 40.7
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 7.3e-19 98.2 206 41.3
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 9.6e-19 97.8 205 39.5
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 9.6e-19 97.8 206 39.8
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 9.6e-19 97.8 205 39.5
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.2e-18 97.4 199 46.2
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.2e-18 97.4 206 40.8
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.1e-18 96.7 193 43.0
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-18 96.3 196 40.8
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.8e-18 96.3 206 40.3
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.6e-18 95.9 204 41.7
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 3.6e-18 95.9 193 38.9
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.7e-18 95.5 196 41.8
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 4.7e-18 95.5 193 40.9
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-17 94.4 206 39.8
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-17 94.4 206 39.8
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.4e-17 94.0 211 40.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.8e-17 93.6 149 45.0
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-17 92.8 206 39.3
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-17 92.8 206 39.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 4.0e-17 92.4 199 40.7
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.0e-17 92.4 207 39.1
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 4.0e-17 92.4 195 44.1
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.0e-17 92.4 199 40.7
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 4.0e-17 92.4 195 44.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.0e-17 92.4 199 40.7
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.2e-17 92.0 202 43.1
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 5.2e-17 92.0 204 37.7
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 6.9e-17 91.7 207 42.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 6.9e-17 91.7 205 38.0
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 6.9e-17 91.7 174 43.7
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 6.9e-17 91.7 203 39.4
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 8.9e-17 91.3 198 37.9
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 8.9e-17 91.3 193 40.4
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.2e-16 90.9 193 40.4
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-16 90.5 212 37.3
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.5e-16 90.5 212 37.3
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.5e-16 90.5 209 40.2
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.0e-16 90.1 204 41.2
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 2.6e-16 89.7 193 40.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-16 89.7 203 35.5
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-16 89.7 212 37.3
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 2.6e-16 89.7 212 37.3
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 2.6e-16 89.7 207 40.6
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.4e-16 89.4 199 42.2
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.4e-16 89.0 141 53.2
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 5.8e-16 88.6 197 41.1
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 7.6e-16 88.2 172 44.8
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 7.6e-16 88.2 197 40.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 9.9e-16 87.8 198 39.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-15 87.4 195 40.0
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.3e-15 87.4 196 41.8
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.2e-15 86.7 201 40.3
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.8e-15 85.9 174 38.5
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.9e-15 85.5 172 44.8
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.4e-15 85.1 197 39.1
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.4e-14 84.0 207 39.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.4e-14 83.2 151 44.4
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.4e-14 83.2 77 59.7
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 2.4e-14 83.2 206 37.9
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.2e-14 82.8 150 42.7
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.2e-14 82.8 212 37.7
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 3.2e-14 82.8 210 37.1
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 4.2e-14 82.4 192 41.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.2e-14 82.4 77 59.7
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 7.1e-14 81.6 195 41.5
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 7.1e-14 81.6 171 40.4
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.2e-13 80.9 82 56.1
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.6e-13 80.5 81 59.3
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.6e-13 80.5 87 59.8
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.7e-13 79.7 202 39.1
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 6.0e-13 78.6 190 37.4
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.0e-13 78.6 198 39.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.0e-12 77.8 194 37.6
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.7e-12 77.0 76 55.3
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 2.3e-12 76.6 192 38.0
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.0e-12 76.3 71 59.2
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.9e-12 75.9 86 52.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 8.7e-12 74.7 79 51.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.5e-11 73.9 190 35.8
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 2.5e-11 73.2 196 36.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.4e-09 67.4 77 53.2
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 9.0e-09 64.7 196 36.7
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.7e-07 60.5 197 37.1
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 7.1e-06 55.1 153 35.9


User provided reference genes

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