Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 0.0e+00 1645.9 852 100.0
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1402.5 858 85.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1289.2 759 87.7
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1262.3 861 79.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1251.9 859 79.0
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1239.2 860 78.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 0.0e+00 1238.0 861 78.0
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1234.9 858 77.7
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1233.8 861 78.0
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1224.9 870 77.2
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1210.3 873 76.5
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1170.6 872 73.7
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1151.7 872 71.1
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 0.0e+00 1125.2 862 69.7
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 0.0e+00 1118.2 974 65.2
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1103.6 876 69.1
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 0.0e+00 1099.7 870 69.4
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 0.0e+00 1076.6 870 66.7
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-303 1046.6 865 65.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.8e-303 1045.8 864 66.6
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.0e-303 1044.6 867 65.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 9.8e-302 1040.0 871 66.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.4e-300 1036.2 865 65.1
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 4.7e-296 1021.1 873 63.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.8e-295 1017.3 862 67.2
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.4e-294 1014.6 872 64.6
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 5.8e-294 1014.2 877 64.1
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 9.2e-292 1006.9 892 63.3
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.9e-290 1001.5 866 64.3
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.1e-289 1000.0 874 65.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 7.3e-289 997.3 873 64.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 9.6e-289 996.9 873 63.2
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 8.9e-287 990.3 864 63.3
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.9e-284 982.6 879 63.6
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.6e-283 978.0 873 63.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.3e-282 976.5 918 62.2
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 8.7e-282 973.8 870 62.6
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 7.3e-281 970.7 877 62.6
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 9.6e-281 970.3 870 62.8
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.8e-280 968.8 891 60.7
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.2e-280 967.6 868 62.6
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 6.2e-280 967.6 870 61.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 6.9e-279 964.1 875 62.4
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 4.4e-278 961.4 874 61.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.8e-277 958.4 867 61.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.4e-277 957.2 868 61.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 5.4e-276 954.5 858 62.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.6e-275 953.0 873 62.5
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.6e-275 951.4 876 61.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.0e-274 948.7 871 62.0
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 3.9e-274 948.3 745 70.6
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 8.7e-274 947.2 872 61.0
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.9e-273 946.0 843 61.9
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.4e-271 939.9 851 63.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 3.4e-270 935.3 887 60.3
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 4.5e-270 934.9 868 60.9
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 4.5e-270 934.9 946 58.1
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.9e-269 932.2 877 60.8
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.0e-266 923.7 874 59.8
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.5e-265 919.1 857 59.7
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 5.6e-265 917.9 870 59.1
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 3.1e-263 912.1 876 59.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.1e-263 912.1 876 59.0
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 4.0e-263 911.8 875 59.7
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.0e-263 911.8 895 57.8
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 9.0e-263 910.6 876 59.2
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 5.8e-262 907.9 721 68.9
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.9e-261 905.6 864 59.1
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 4.9e-261 904.8 872 58.9
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.0e-258 897.1 759 65.9
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.3e-257 892.1 842 59.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.3e-257 892.1 873 58.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 8.4e-253 877.5 886 56.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.4e-252 876.7 867 57.0
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.2e-252 875.5 867 58.4
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 4.2e-252 875.2 866 57.4
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 7.9e-251 870.9 925 55.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.1e-249 867.1 870 59.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 9.7e-249 864.0 843 58.8
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.3e-248 863.6 868 57.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.1e-247 860.5 873 56.9
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 5.3e-247 858.2 772 62.2
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.0e-246 856.3 880 57.3
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.5e-244 849.4 956 52.9
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.6e-243 846.7 861 57.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.1e-243 846.3 839 57.8
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 4.6e-243 845.1 794 61.1
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.5e-241 839.3 878 56.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 9.7e-241 837.4 869 56.3
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.8e-240 835.9 876 57.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 4.8e-240 835.1 870 56.1
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.8e-240 835.1 874 55.8
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-239 833.9 872 56.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 5.3e-239 831.6 872 56.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.5e-238 830.1 849 56.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.2e-237 826.2 869 56.3
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.5e-236 822.8 875 55.8
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.2e-236 822.4 845 57.2
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 9.4e-236 820.8 875 56.2
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 6.1e-235 818.1 727 61.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.5e-233 813.5 1036 48.7
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 5.7e-233 811.6 804 58.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.7e-232 810.1 908 54.0
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 3.5e-230 802.4 871 54.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.8e-229 798.9 871 54.0
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 3.6e-227 792.3 874 54.6
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.8e-224 782.7 817 57.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.8e-223 780.0 871 54.2
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.8e-221 772.3 737 58.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.8e-218 763.5 881 51.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 5.7e-217 758.4 875 54.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.4e-215 753.8 866 51.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-211 740.7 751 58.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 4.7e-211 738.8 851 51.0
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.0e-210 737.6 557 72.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.3e-204 716.1 871 50.7
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 4.7e-203 712.2 601 64.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 7.8e-198 694.9 852 49.3
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.6e-190 670.6 866 47.8
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.6e-190 670.6 884 48.4
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 8.3e-184 648.3 921 45.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 7.1e-183 645.2 1115 40.9
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-182 644.4 556 65.5
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.7e-181 640.6 446 77.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.7e-160 570.9 829 44.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.9e-160 570.1 758 44.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-159 568.2 883 43.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.9e-159 567.4 579 56.1
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.1e-154 550.1 832 43.3
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 7.1e-151 538.9 584 54.8
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.3e-148 530.0 767 43.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.8e-133 481.1 898 37.3
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.7e-128 464.5 566 51.6
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.5e-121 439.9 366 65.8
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.6e-113 414.8 546 46.9
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 9.7e-108 395.6 813 35.2
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.3e-99 368.6 441 53.1
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 8.0e-94 349.4 641 35.4
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.4e-93 348.6 312 59.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.1e-90 339.0 727 33.3
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.4e-90 336.7 261 70.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-67 262.3 292 54.8
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-63 249.2 246 54.9
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.6e-57 227.3 195 68.7
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-51 208.0 138 79.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 5.6e-39 167.2 173 57.2
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.4e-36 157.9 397 34.5
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-32 146.0 391 35.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-32 146.0 391 35.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-25 122.5 179 45.8
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-25 122.5 179 45.8
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.2e-22 112.1 333 29.1
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 109.4 132 47.7
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 6.5e-19 100.5 174 37.9
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-18 99.0 171 42.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 3.2e-18 98.2 175 41.7
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-17 96.3 60 81.7
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-16 92.4 95 55.8
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.1e-15 89.7 197 37.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 8.2e-14 83.6 101 49.5
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 7.7e-12 77.0 220 26.8
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 4.2e-10 71.2 171 35.7
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 5.5e-10 70.9 102 41.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.6e-09 69.3 79 51.9
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.1e-09 68.9 80 50.0
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 2.7e-09 68.6 50 60.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.0e-08 65.1 37 89.2
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.1e-08 64.3 49 61.2
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 1.5e-07 62.8 96 40.6
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 3.3e-07 61.6 102 42.2
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-07 61.2 47 59.6


User provided reference genes

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