Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 1.6e-152 542.7 273 100.0
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 1.6e-136 489.6 264 92.4
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 2.2e-117 426.0 269 83.6
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.1e-116 421.8 269 82.9
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.7e-115 417.5 269 82.2
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 4.2e-113 411.8 268 81.0
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.2e-113 411.8 268 81.0
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 2.0e-110 402.9 276 74.3
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 9.7e-110 400.6 265 77.0
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 1.0e-106 390.6 265 77.4
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.6e-104 383.3 273 72.5
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 1.1e-102 377.1 267 72.3
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.5e-102 376.7 270 73.0
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 4.4e-102 375.2 264 72.3
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 1.3e-101 373.6 265 71.7
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 1.8e-100 369.8 265 71.7
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 2.4e-100 369.4 266 72.2
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 3.1e-100 369.0 272 71.0
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 9.1e-100 367.5 272 70.6
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 9.1e-100 367.5 267 71.2
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 9.1e-100 367.5 272 69.1
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 1.2e-99 367.1 266 71.4
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 1.2e-99 367.1 227 79.7
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 1.6e-99 366.7 229 77.7
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 2.0e-99 366.3 267 72.3
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.5e-99 365.5 265 69.4
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 3.5e-99 365.5 274 69.0
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 4.5e-99 365.2 265 69.4
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 7.7e-99 364.4 264 71.2
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 7.7e-99 364.4 264 70.8
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 7.7e-99 364.4 264 71.2
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 1.3e-98 363.6 271 69.7
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.7e-98 363.2 272 71.3
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 3.8e-98 362.1 264 72.3
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 5.0e-98 361.7 264 70.1
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 5.0e-98 361.7 274 69.0
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 5.0e-98 361.7 265 69.1
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 2.5e-97 359.4 279 69.2
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 3.2e-97 359.0 269 68.0
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 7.2e-97 357.8 272 71.0
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 1.2e-96 357.1 225 77.8
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 2.1e-96 356.3 270 68.9
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 4.7e-96 355.1 272 67.3
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 4.7e-96 355.1 237 73.4
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 8.0e-96 354.4 265 72.1
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 1.0e-95 354.0 268 69.8
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.4e-95 353.6 265 69.1
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.8e-95 353.2 275 66.9
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 2.3e-95 352.8 267 68.9
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 8.8e-95 350.9 272 68.8
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.2e-94 350.5 244 70.9
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 2.6e-94 349.4 270 65.6
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 5.7e-94 348.2 271 68.3
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 9.7e-94 347.4 282 67.7
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.3e-93 347.1 269 70.3
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 1.7e-93 346.7 264 68.9
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.7e-93 346.7 270 68.5
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.7e-93 346.7 265 67.5
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 4.8e-93 345.1 264 67.4
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 6.3e-93 344.7 287 66.9
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.8e-92 343.2 282 65.2
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.4e-92 342.8 270 67.4
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.4e-92 342.8 270 68.1
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 2.4e-92 342.8 245 71.0
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 7.0e-92 341.3 272 67.3
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 3.5e-91 339.0 244 69.7
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 3.5e-91 339.0 259 68.7
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 7.7e-91 337.8 238 71.4
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 7.7e-91 337.8 238 71.4
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 1.0e-90 337.4 260 68.1
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 3.8e-90 335.5 271 66.4
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 5.0e-90 335.1 270 67.4
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 1.1e-89 334.0 255 68.6
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.5e-89 333.6 218 76.1
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 2.5e-89 332.8 254 68.1
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 7.2e-89 331.3 228 72.8
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.6e-88 330.1 258 65.1
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.6e-88 330.1 270 65.2
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.6e-88 330.1 270 65.2
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 4.7e-88 328.6 254 67.7
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 8.0e-88 327.8 265 66.8
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.0e-87 327.4 232 73.3
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 5.2e-87 325.1 221 75.1
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 8.8e-87 324.3 279 63.4
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 6.3e-85 318.2 244 69.3
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 9.1e-84 314.3 261 65.1
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 9.1e-84 314.3 267 63.3
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 9.5e-81 304.3 224 67.4
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 4.0e-79 298.9 215 69.3
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 4.4e-78 295.4 219 67.6
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 7.5e-78 294.7 234 64.5
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 8.3e-77 291.2 260 56.5
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.8e-76 290.0 230 67.0
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 3.6e-72 275.8 172 76.7
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.5e-65 253.1 269 57.2
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 2.1e-64 250.0 170 71.8
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.7e-61 240.4 267 53.9
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 1.9e-57 226.9 214 54.2
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 9.9e-54 214.5 212 52.8
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 7.3e-49 198.4 218 45.4
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.3e-42 177.6 245 44.9
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 2.5e-41 173.3 116 73.3
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 3.8e-37 159.5 250 37.2
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 1.9e-36 157.1 224 41.1
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 3.4e-30 136.3 228 36.0
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 3.8e-29 132.9 126 54.8
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.4e-25 118.6 84 64.3
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 8.1e-24 115.2 74 73.0
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 9.3e-20 101.7 108 49.1
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.3e-16 91.3 103 51.5
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 6.9e-15 85.5 59 71.2
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.5e-14 84.3 98 51.0
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 9.7e-09 65.1 69 52.2
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 9.7e-09 65.1 69 52.2
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 2.8e-08 63.5 69 50.7
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.9e-07 58.9 51 56.9
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 1.5e-06 57.8 57 57.9
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 2.6e-06 57.0 54 44.4


User provided reference genes

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