Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 5.2e-38 160.6 84 100.0
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.6e-23 111.3 85 68.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-19 99.4 82 61.0
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 2.4e-19 98.6 84 58.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.4e-19 97.4 82 59.8
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.2e-18 96.3 73 63.0
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-18 95.9 82 59.8
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-18 95.9 82 59.8
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-17 93.2 84 57.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.0e-17 93.2 79 58.2
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.3e-17 92.0 84 57.1
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.6e-17 90.5 84 56.0
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.6e-17 90.1 84 56.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-16 89.7 84 50.0
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.5e-16 89.4 84 50.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.6e-16 87.4 79 55.7
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.3e-16 87.0 84 53.6
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.1e-15 85.5 76 55.3
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 6.2e-15 84.0 84 54.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 6.2e-15 84.0 84 54.8
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 6.2e-15 84.0 81 54.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.1e-15 83.6 72 55.6
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 2.4e-14 82.0 79 54.4
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 2.4e-14 82.0 73 58.9
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 5.2e-14 80.9 88 50.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 5.2e-14 80.9 82 53.7
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.2e-14 80.9 75 57.3
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 6.8e-14 80.5 89 49.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 6.8e-14 80.5 81 54.3
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 8.9e-14 80.1 78 55.1
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.6e-13 78.6 80 50.0
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.4e-13 78.2 80 52.5
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 3.4e-13 78.2 80 52.5
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 3.4e-13 78.2 81 56.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.8e-13 77.4 83 50.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 7.6e-13 77.0 87 47.1
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 7.6e-13 77.0 83 49.4
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 7.6e-13 77.0 80 52.5
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 7.6e-13 77.0 79 51.9
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 9.9e-13 76.6 91 57.1
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.3e-12 76.3 79 53.2
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.7e-12 75.9 82 51.2
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.2e-12 75.5 74 55.4
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.9e-12 75.1 83 50.6
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 3.8e-12 74.7 83 48.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 4.9e-12 74.3 86 46.5
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 6.4e-12 73.9 75 54.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.9e-11 72.4 74 50.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.4e-11 72.0 69 55.1
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.4e-11 72.0 75 52.0
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.4e-11 72.0 76 52.6
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.4e-11 72.0 82 51.2
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 88 45.5
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 4.1e-11 71.2 76 47.4
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.1e-11 71.2 78 53.8
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 4.1e-11 71.2 84 50.0
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 5.4e-11 70.9 74 52.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 7.1e-11 70.5 85 55.3
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 7.1e-11 70.5 78 46.2
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 9.2e-11 70.1 84 46.4
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.2e-10 69.7 80 52.5
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.2e-10 69.7 79 43.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.2e-10 69.7 81 49.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.6e-10 69.3 82 51.2
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.6e-10 69.3 79 51.9
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.1e-10 68.9 75 46.7
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 2.7e-10 68.6 72 51.4
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 2.7e-10 68.6 81 48.1
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 4.6e-10 67.8 96 46.9
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 6.0e-10 67.4 83 55.4
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-09 66.2 84 46.4
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 1.3e-09 66.2 75 53.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.7e-09 65.9 84 45.2
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.3e-09 65.5 79 57.0
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.3e-09 65.5 76 43.4
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 3.0e-09 65.1 88 40.9
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.9e-09 64.7 74 45.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.9e-09 64.7 75 42.7
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 3.9e-09 64.7 79 45.6
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 5.1e-09 64.3 86 46.5
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 6.6e-09 63.9 83 47.0
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 6.6e-09 63.9 75 44.0
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 6.6e-09 63.9 73 47.9
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 8.7e-09 63.5 51 60.8
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.1e-08 63.2 83 47.0
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-08 62.8 86 41.9
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.9e-08 62.4 76 44.7
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.9e-08 62.4 87 44.8
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.9e-08 62.4 71 47.9
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.9e-08 62.4 79 46.8
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.5e-08 62.0 63 50.8
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.5e-08 62.0 70 45.7
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.3e-08 61.2 89 41.6
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 4.3e-08 61.2 77 41.6
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.3e-08 61.2 70 52.9
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.6e-08 60.8 82 52.4
RcHm_v2.0_Chr7g0179751 Rosa chinensis HOM05D003533 ORTHO05D004009 5.6e-08 60.8 81 54.3
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 5.6e-08 60.8 83 50.6
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 5.6e-08 60.8 83 50.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 7.3e-08 60.5 80 40.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 7.3e-08 60.5 79 43.0
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 9.6e-08 60.1 83 43.4
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.6e-08 60.1 69 46.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 9.6e-08 60.1 80 43.8
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 9.6e-08 60.1 80 45.0
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.2e-07 59.7 81 39.5
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.2e-07 59.7 79 39.2
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.1e-07 58.9 77 50.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.1e-07 58.9 79 44.3
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.8e-07 58.5 73 45.2
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 2.8e-07 58.5 82 43.9
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.8e-07 58.5 76 50.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 3.6e-07 58.2 73 43.8
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 4.7e-07 57.8 82 42.7
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.7e-07 57.8 82 45.1
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 4.7e-07 57.8 76 42.1
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.7e-07 57.8 80 42.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.2e-07 57.4 81 39.5
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.2e-07 57.4 82 39.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.2e-07 57.4 82 39.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.1e-07 57.0 73 47.9
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.1e-07 57.0 78 39.7
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 8.1e-07 57.0 78 39.7
A01p25480 Brassica napus HOM05D013399 ORTHO05D019752 1.4e-06 56.2 76 47.4
BraA01t02465Z Brassica rapa HOM05D013399 ORTHO05D019752 1.4e-06 56.2 76 47.4
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.4e-06 56.2 78 37.2
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.4e-06 56.2 79 46.8
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.8e-06 55.8 79 41.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-06 55.8 83 38.6
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.8e-06 55.8 83 38.6
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-06 55.5 82 45.1
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-06 55.5 82 45.1
C01p31910 Brassica napus HOM05D013399 ORTHO05D019752 2.4e-06 55.5 76 47.4
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-06 55.5 82 45.1
BolC1t03165H Brassica oleracea HOM05D013399 ORTHO05D019752 2.4e-06 55.5 76 47.4
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 2.4e-06 55.5 82 45.1
Haze_12125 Corylus avellana HOM05D003533 ORTHO05D004009 2.4e-06 55.5 82 42.7
Sed0014302 Sechium edule HOM05D003533 ORTHO05D004009 2.4e-06 55.5 79 49.4
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.1e-06 55.1 83 37.3
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 3.1e-06 55.1 81 38.3
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 4.0e-06 54.7 72 41.7
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 4.0e-06 54.7 72 41.7
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 4.0e-06 54.7 80 42.5
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 5.2e-06 54.3 80 50.0
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 6.9e-06 53.9 85 37.6
QL03p067226 Quercus lobata HOM05D003533 ORTHO05D337234 6.9e-06 53.9 77 42.9


User provided reference genes

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