Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 4.8e-64 247.7 125 100.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.0e-46 189.1 113 86.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-46 188.7 127 79.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 7.7e-46 187.2 127 79.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.0e-45 186.8 120 82.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.9e-45 185.3 127 79.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-45 184.1 113 84.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-45 184.1 113 85.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.5e-44 183.0 125 77.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.5e-44 182.2 113 83.2
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.5e-44 181.0 134 72.4
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.2e-41 173.3 122 73.0
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 7.5e-41 170.6 125 72.8
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.3e-40 169.9 112 77.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 3.7e-40 168.3 122 72.1
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.8e-40 167.9 127 69.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.3e-40 167.5 127 72.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.4e-39 166.4 118 71.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.4e-39 165.6 111 73.9
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.1e-39 164.9 124 66.9
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.4e-39 164.5 123 69.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.6e-38 162.9 123 68.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.0e-38 162.5 124 66.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 7.7e-38 160.6 133 62.4
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.3e-37 159.8 123 67.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.7e-37 159.5 123 66.7
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.8e-37 158.3 131 61.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.8e-37 158.3 121 66.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.5e-36 156.4 128 63.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.5e-36 155.6 116 69.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.5e-36 155.6 121 63.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.5e-36 155.6 119 67.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.2e-36 154.8 130 61.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.2e-36 154.8 119 66.4
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 9.5e-36 153.7 116 69.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.2e-35 153.3 127 63.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-35 153.3 127 67.7
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.6e-35 152.9 107 75.7
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.1e-35 152.5 120 63.3
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.8e-35 152.1 122 66.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.6e-35 151.8 125 64.8
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.6e-35 151.8 124 62.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 4.7e-35 151.4 123 65.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 6.1e-35 151.0 120 65.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.1e-35 151.0 116 68.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.1e-35 151.0 116 68.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 8.0e-35 150.6 126 61.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.8e-34 149.4 130 63.8
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.3e-34 149.1 116 67.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 5.2e-34 147.9 125 63.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.2e-34 147.9 127 59.8
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.8e-34 147.5 125 62.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 6.8e-34 147.5 125 63.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.8e-34 147.5 119 62.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.2e-33 146.7 126 63.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.0e-33 146.0 126 62.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.0e-33 146.0 119 61.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.6e-33 145.6 125 62.4
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.7e-33 144.4 118 61.0
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 9.8e-33 143.7 111 66.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-32 143.3 120 61.7
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 6.3e-32 141.0 117 59.8
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 8.3e-32 140.6 128 56.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.1e-31 140.2 142 54.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.8e-31 139.4 126 57.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 4.1e-31 138.3 124 58.1
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.2e-30 136.7 114 64.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-30 135.6 125 59.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-30 135.6 125 59.2
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 7.8e-30 134.0 113 58.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.0e-29 133.7 136 56.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.3e-29 133.3 125 56.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.9e-29 132.1 118 55.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.9e-29 132.1 81 81.5
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 5.0e-29 131.3 81 80.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.6e-29 131.0 125 56.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 6.6e-29 131.0 112 59.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.6e-29 130.6 121 57.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.5e-28 129.0 124 58.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.3e-28 128.6 125 55.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 9.5e-28 127.1 151 45.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.2e-27 126.7 122 54.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.6e-27 125.2 122 54.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.1e-27 124.4 117 57.3
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.8e-26 122.9 110 60.0
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-26 122.1 115 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 5.2e-26 121.3 118 51.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.0e-25 119.4 84 75.0
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.4e-25 118.6 84 70.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 9.8e-25 117.1 123 50.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.7e-24 116.3 75 73.3
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.2e-24 115.9 122 50.8
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-24 115.9 125 49.6
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.9e-24 115.5 119 49.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.9e-24 114.8 122 50.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 6.4e-24 114.4 78 70.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 6.4e-24 114.4 119 49.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.1e-23 113.6 124 47.6
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.9e-23 112.8 122 50.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-23 112.5 118 51.7
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-23 112.5 118 50.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 5.4e-23 111.3 122 48.4
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.4e-23 111.3 126 49.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.2e-22 110.2 124 47.6
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-22 109.8 126 49.2
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-22 109.8 126 49.2
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.6e-22 109.8 126 49.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.5e-22 108.6 121 48.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.6e-22 108.2 68 76.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.0e-22 107.8 118 52.5
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.9e-21 105.1 56 92.9
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 8.6e-21 104.0 118 45.8
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 8.6e-21 104.0 118 45.8
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.6e-21 104.0 118 47.5
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 8.6e-21 104.0 128 48.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.3e-20 102.1 122 43.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.6e-20 101.3 118 46.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 7.3e-20 100.9 84 58.3
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.8e-18 94.4 81 58.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.2e-17 93.6 56 80.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 8.3e-16 87.4 68 60.3
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.0e-13 79.0 123 38.2
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 8.6e-13 77.4 132 38.6
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-12 76.6 119 38.7
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-12 76.6 121 38.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.5e-12 75.9 121 38.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 7.3e-12 74.3 120 36.7
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.1e-11 70.9 75 50.7
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 5.2e-10 68.2 140 32.9
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 6.8e-10 67.8 75 45.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.2e-09 67.0 118 35.6
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.5e-09 66.6 122 35.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-09 66.6 119 37.8
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.8e-09 64.7 94 38.3
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.2e-08 62.8 122 32.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.9e-07 59.7 112 32.1
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 3.5e-06 55.5 89 37.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.8e-06 54.3 79 40.5


User provided reference genes

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