Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 4.2e-34 147.9 101 100.0
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 2.5e-23 112.1 98 80.6
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 7.2e-18 94.0 95 65.3
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 9.7e-15 83.6 57 77.2
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.7e-14 82.8 52 78.8
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 2.2e-14 82.4 58 75.9
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 2.2e-14 82.4 55 80.0
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 2.8e-14 82.0 57 73.7
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 4.8e-14 81.3 51 78.4
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 6.3e-14 80.9 58 69.0
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 1.4e-13 79.7 52 76.9
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 1.8e-13 79.3 51 76.5
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.4e-13 79.0 52 76.9
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 4.1e-13 78.2 45 86.7
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 5.3e-13 77.8 56 71.4
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 5.3e-13 77.8 55 70.9
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 7.0e-13 77.4 53 71.7
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 9.1e-13 77.0 52 69.2
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 2.6e-12 75.5 52 73.1
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.6e-12 75.5 60 65.0
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 3.5e-12 75.1 60 65.0
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 3.5e-12 75.1 45 84.4
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 4.5e-12 74.7 56 67.9
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 5.9e-12 74.3 49 75.5
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 5.9e-12 74.3 49 75.5
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 5.9e-12 74.3 49 75.5
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 1.3e-11 73.2 55 69.1
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 1.3e-11 73.2 56 66.1
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 1.7e-11 72.8 54 63.0
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 2.2e-11 72.4 63 63.5
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.9e-11 72.0 56 66.1
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 6.5e-11 70.9 50 72.0
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 8.5e-11 70.5 54 64.8
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 1.1e-10 70.1 55 60.0
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 1.5e-10 69.7 57 57.9
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 1.9e-10 69.3 48 68.8
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 4.2e-10 68.2 56 60.7
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 7.2e-10 67.4 49 69.4
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 1.6e-09 66.2 51 68.6
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 2.1e-09 65.9 48 60.4
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 6.1e-09 64.3 55 58.2
THA.LOC109117024 Tarenaya hassleriana HOM05D009339 ORTHO05D011480 6.1e-09 64.3 50 62.0
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 2.3e-08 62.4 55 60.0
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 5.2e-08 61.2 44 70.5
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 1.1e-07 60.1 51 54.9
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 1.1e-07 60.1 51 52.9
AT1G23995 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 3.3e-07 58.5 61 49.2
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 3.3e-07 58.5 52 59.6
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 7.5e-07 57.4 47 66.0
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 7.5e-07 57.4 44 61.4
AT1G23965 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 9.7e-07 57.0 61 49.2
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 9.7e-07 57.0 41 63.4
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 2.2e-06 55.8 58 50.0
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 6.3e-06 54.3 45 57.8
Aa31LG7G7790 Aethionema arabicum HOM05D009339 ORTHO05D011480 8.2e-06 53.9 63 47.6
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 8.2e-06 53.9 58 44.8
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.2e-06 53.9 59 45.8
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.2e-06 53.9 59 45.8
HPP92_010558 Vanilla planifolia HOM05D008443 ORTHO05D010587 8.2e-06 53.9 61 45.9


User provided reference genes

Program Settings